position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title pro -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 26 Sum of sequence lengths 19526 Min sequence length 0 Max sequence length 751 Average sequence length 751 Possible positions 19526 Sequences: # length ID 1 751 FBgn0002284|Prosbeta6 2 751 FBgn0002787|Rpn8 3 751 FBgn0010590|Prosbeta1 4 751 FBgn0011327|Uch-L5 5 751 FBgn0015283|Rpn10 6 751 FBgn0017556|Prosalpha4T2 7 751 FBgn0029745|Rpn13R 8 751 FBgn0029812|Prosbeta2R1 9 751 FBgn0030370|Uch-L5R 10 751 FBgn0031442|Prosbeta4R1 11 751 FBgn0031443|Prosbeta4R2 12 751 FBgn0032492|Prosalpha6T 13 751 FBgn0033886|Rpn13 14 751 FBgn0034842|Prosbeta5R1 15 751 FBgn0036224|Rpt4R 16 751 FBgn0036465|Rpn12R 17 751 FBgn0037296|Prosbeta2R2 18 751 FBgn0037742|Rpt3R 19 751 FBgn0039788|Rpt6R 20 751 FBgn0050382|Prosalpha1R 21 751 FBgn0051742|Prosbeta5R2 22 751 FBgn0250746|Prosbeta7 23 751 FBgn0261394|Prosalpha3 24 751 FBgn0261395|Prosalpha3T 25 751 FBgn0263121|Prosalpha1 26 751 FBgn0265606|Prosalpha4T1 Oligonucleotide statistics: Total occurrences 18792 Position interval parameters: Position interval 20 Number of windows 38 Total positions 19526 Degrees of freedom 37 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -19 [-379,-360] -369.5 26 416 2 -18 [-359,-340] -349.5 26 520 3 -17 [-339,-320] -329.5 26 520 4 -16 [-319,-300] -309.5 26 520 5 -15 [-299,-280] -289.5 26 520 6 -14 [-279,-260] -269.5 26 520 7 -13 [-259,-240] -249.5 26 520 8 -12 [-239,-220] -229.5 26 520 9 -11 [-219,-200] -209.5 26 520 10 -10 [-199,-180] -189.5 26 520 11 -9 [-179,-160] -169.5 26 520 12 -8 [-159,-140] -149.5 26 520 13 -7 [-139,-120] -129.5 26 520 14 -6 [-119,-100] -109.5 26 520 15 -5 [-99,-80] -89.5 26 520 16 -4 [-79,-60] -69.5 26 520 17 -3 [-59,-40] -49.5 26 520 18 -2 [-39,-20] -29.5 26 520 19 -1 [-19,0] -9.5 26 520 20 0 [1,20] 10.5 26 520 21 1 [21,40] 30.5 26 520 22 2 [41,60] 50.5 26 520 23 3 [61,80] 70.5 26 520 24 4 [81,100] 90.5 26 520 25 5 [101,120] 110.5 26 520 26 6 [121,140] 130.5 26 520 27 7 [141,160] 150.5 26 520 28 8 [161,180] 170.5 26 520 29 9 [181,200] 190.5 26 520 30 10 [201,220] 210.5 26 520 31 11 [221,240] 230.5 26 520 32 12 [241,260] 250.5 26 520 33 13 [261,280] 270.5 26 520 34 14 [281,300] 290.5 26 520 35 15 [301,320] 310.5 26 520 36 16 [321,340] 330.5 26 520 37 17 [341,360] 350.5 26 520 38 18 [361,380] 370.5 26 390 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -369.5 occurrences in window 1 [-379,-360] 11 -349.5 occurrences in window 2 [-359,-340] 12 -329.5 occurrences in window 3 [-339,-320] 13 -309.5 occurrences in window 4 [-319,-300] 14 -289.5 occurrences in window 5 [-299,-280] 15 -269.5 occurrences in window 6 [-279,-260] 16 -249.5 occurrences in window 7 [-259,-240] 17 -229.5 occurrences in window 8 [-239,-220] 18 -209.5 occurrences in window 9 [-219,-200] 19 -189.5 occurrences in window 10 [-199,-180] 20 -169.5 occurrences in window 11 [-179,-160] 21 -149.5 occurrences in window 12 [-159,-140] 22 -129.5 occurrences in window 13 [-139,-120] 23 -109.5 occurrences in window 14 [-119,-100] 24 -89.5 occurrences in window 15 [-99,-80] 25 -69.5 occurrences in window 16 [-79,-60] 26 -49.5 occurrences in window 17 [-59,-40] 27 -29.5 occurrences in window 18 [-39,-20] 28 -9.5 occurrences in window 19 [-19,0] 29 10.5 occurrences in window 20 [1,20] 30 30.5 occurrences in window 21 [21,40] 31 50.5 occurrences in window 22 [41,60] 32 70.5 occurrences in window 23 [61,80] 33 90.5 occurrences in window 24 [81,100] 34 110.5 occurrences in window 25 [101,120] 35 130.5 occurrences in window 26 [121,140] 36 150.5 occurrences in window 27 [141,160] 37 170.5 occurrences in window 28 [161,180] 38 190.5 occurrences in window 29 [181,200] 39 210.5 occurrences in window 30 [201,220] 40 230.5 occurrences in window 31 [221,240] 41 250.5 occurrences in window 32 [241,260] 42 270.5 occurrences in window 33 [261,280] 43 290.5 occurrences in window 34 [281,300] 44 310.5 occurrences in window 35 [301,320] 45 330.5 occurrences in window 36 [321,340] 46 350.5 occurrences in window 37 [341,360] 47 370.5 occurrences in window 38 [361,380]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 4580 | 116.6 | 37 | 3.6e-10 | 1.4e-09 | 8.84 | 1 | 59 | 85 | 91 | 86 | 81 | 82 | 90 | 114 | 125 | 126 | 132 | 120 | 122 | 125 | 125 | 125 | 134 | 139 | 121 | 134 | 122 | 127 | 145 | 122 | 136 | 153 | 126 | 127 | 134 | 140 | 137 | 120 | 138 | 124 | 138 | 139 | 141 | 95 |
| t | t | 4633 | 93.6 | 37 | 8.5e-07 | 3.4e-06 | 5.47 | 2 | 137 | 170 | 146 | 146 | 163 | 151 | 143 | 127 | 127 | 129 | 113 | 111 | 136 | 127 | 119 | 121 | 113 | 111 | 114 | 125 | 107 | 124 | 117 | 105 | 126 | 119 | 111 | 122 | 113 | 114 | 107 | 121 | 113 | 115 | 101 | 102 | 104 | 83 |
| a | a | 5068 | 90.9 | 37 | 2.0e-06 | 8e-06 | 5.10 | 3 | 140 | 166 | 153 | 175 | 159 | 161 | 178 | 157 | 136 | 119 | 143 | 151 | 121 | 125 | 140 | 133 | 130 | 117 | 121 | 124 | 128 | 128 | 120 | 125 | 114 | 117 | 126 | 126 | 135 | 113 | 122 | 131 | 127 | 113 | 135 | 118 | 132 | 109 |
| c | c | 4511 | 76.2 | 37 | 1.6e-04 | 0.00062 | 3.21 | 4 | 80 | 80 | 110 | 93 | 97 | 106 | 89 | 102 | 112 | 126 | 112 | 118 | 121 | 123 | 116 | 121 | 123 | 133 | 144 | 117 | 143 | 121 | 118 | 148 | 124 | 111 | 137 | 125 | 118 | 133 | 134 | 128 | 122 | 148 | 126 | 141 | 123 | 88 |
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