; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	6	10	0	0	1	0	32	0	6	6
c	3	6	32	0	31	32	0	32	14	7
g	8	10	0	0	0	0	0	0	6	8
t	15	6	0	32	0	0	0	0	6	11
//
; Sites	32
>site_0
AGCTCCACCA
>site_1
TCCTCCACCG
>site_2
AACTCCACTG
>site_3
TCCTCCACCT
>site_4
CGCTCCACAC
>site_5
TACTCCACCT
>site_6
TTCTCCACGC
>site_7
TACTCCACGG
>site_8
TTCTCCACAG
>site_9
TCCTCCACCT
>site_10
CTCTACACTC
>site_11
GTCTCCACCG
>site_12
ACCTCCACTA
>site_13
TACTCCACCT
>site_14
AACTCCACCA
>site_15
TCCTCCACCT
>site_16
AACTCCACAA
>site_17
TGCTCCACTT
>site_18
TGCTCCACTC
>site_19
CGCTCCACGT
>site_20
ATCTCCACAG
>site_21
GCCTCCACCA
>site_22
GACTCCACCT
>site_23
GGCTCCACGC
>site_24
GGCTCCACTG
>site_25
TACTCCACCT
>site_26
TACTCCACCT
>site_27
GGCTCCACGC
>site_28
TACTCCACCT
>site_29
GGCTCCACAG
>site_30
GGCTCCACGA
>site_31
TTCTCCACAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	6	5	0	0	2	0	0	0	7	6
c	8	4	25	0	0	25	0	25	8	4
g	7	10	0	0	23	0	0	0	6	6
t	4	6	0	25	0	0	25	0	4	9
//
; Sites	25
>site_0
ATCTGCTCAT
>site_1
CGCTGCTCAG
>site_2
GTCTACTCCT
>site_3
CGCTGCTCAT
>site_4
GACTGCTCTT
>site_5
TGCTGCTCCA
>site_6
CTCTACTCTG
>site_7
TGCTGCTCAA
>site_8
CGCTGCTCAG
>site_9
GGCTGCTCCC
>site_10
CCCTGCTCAT
>site_11
CACTGCTCGT
>site_12
AGCTGCTCCT
>site_13
GTCTGCTCCA
>site_14
GCCTGCTCTA
>site_15
CACTGCTCCC
>site_16
ATCTGCTCTA
>site_17
TGCTGCTCCA
>site_18
AGCTGCTCAG
>site_19
GACTGCTCGT
>site_20
CCCTGCTCCT
>site_21
TCCTGCTCGG
>site_22
GTCTGCTCGG
>site_23
AGCTGCTCGC
>site_24
AACTGCTCGC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2026-05-29.200834
; Job done	2026-05-29.200834
; Seconds	0.1
;	user	0.1
;	system	0.04
;	cuser	0.49
;	csystem	0.07
