RSAT - peak-motifs result

Analysis: pro (29/05/2026 20:08)

peak-motifs  -v 1 -title pro -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: ctccac (sig=1.60; e-value=0.025) RC: gtggag oligos_6nt_mkv2_m2 assembly: ctgctc (sig=0.17; e-value=0.68) RC: gagcag oligos_6nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ctccacc (sig=1.28; e-value=0.052) RC: ggtggag oligos_7nt_mkv2_m2 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=1.60; evalue=0.025 krCTCCACck MGGTGGAGYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (76.92%) Max nb of predicted sites per peak: 4  (FBgn0265606|Prosalpha4T1) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=0.17; evalue=0.68 sgCTGCTCmt AKGAGCAGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (50.00%) Max nb of predicted sites per peak: 4  (FBgn0036465|Rpn12R) Mean nb of predicted sites per peak: 1.69	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_7nt_mkv2_m1	k-mer sig=1.28; evalue=0.052 tsCTCCACCkb VMGGTGGAGSA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (53.85%) Max nb of predicted sites per peak: 2  (FBgn0033886|Rpn13) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title pro -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P

Warning: Not a single pattern was found in file tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/05/29/peak-motifs.2026-05-29.200826_2026-05-29.200826_3Thh4P/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab