Warning: Skipped invalid row C
; matrix-scan -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/02/matrix-scan_2026-06-02.082752_GO2OpQ.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return pval -uth pval 0.0002 -i $RSAT/public_html/tmp/www-data/2026/06/02/tmp_sequence_2026-06-02.082752_rMKpcH.fasta -seq_format fasta -n score
; Quick counting mode
; Input files
; input $RSAT/public_html/tmp/www-data/2026/06/02/tmp_sequence_2026-06-02.082752_rMKpcH.fasta
; Matrix files
; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/02/matrix-scan_2026-06-02.082752_GO2OpQ.matrix
; Sequence format fasta
; Pseudo counts 1
; Background model
; Method input
; Markov order 1
; Strand undef
; Background pseudo-frequency 0.01
; Residue probabilities
; a 0.29456
; c 0.21206
; g 0.19383
; t 0.29954
; Thresholds lower upper
; pval NA 0.0002
; Output columns
; 1 seq_id
; 2 ft_type
; 3 ft_name
; 4 strand
; 5 start
; 6 end
; 7 sequence
; 8 weight
#seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig
rand_1 limit START_END D -800 -1 . 0 0 0 0
rand_2 limit START_END D -800 -1 . 0 0 0 0
rand_3 limit START_END D -800 -1 . 0 0 0 0
rand_4 limit START_END D -800 -1 . 0 0 0 0
rand_5 limit START_END D -800 -1 . 0 0 0 0
rand_6 limit START_END D -800 -1 . 0 0 0 0
rand_7 limit START_END D -800 -1 . 0 0 0 0
rand_8 limit START_END D -800 -1 . 0 0 0 0
rand_9 limit START_END D -800 -1 . 0 0 0 0
rand_10 limit START_END D -800 -1 . 0 0 0 0
rand_11 limit START_END D -800 -1 . 0 0 0 0
rand_12 limit START_END D -800 -1 . 0 0 0 0
rand_13 limit START_END D -800 -1 . 0 0 0 0
rand_14 limit START_END D -800 -1 . 0 0 0 0
rand_15 limit START_END D -800 -1 . 0 0 0 0
rand_16 limit START_END D -800 -1 . 0 0 0 0
rand_17 limit START_END D -800 -1 . 0 0 0 0
rand_18 limit START_END D -800 -1 . 0 0 0 0
rand_19 limit START_END D -800 -1 . 0 0 0 0
rand_20 limit START_END D -800 -1 . 0 0 0 0
rand_21 limit START_END D -800 -1 . 0 0 0 0
rand_22 limit START_END D -800 -1 . 0 0 0 0
rand_23 limit START_END D -800 -1 . 0 0 0 0
rand_24 limit START_END D -800 -1 . 0 0 0 0
rand_25 limit START_END D -800 -1 . 0 0 0 0
rand_26 limit START_END D -800 -1 . 0 0 0 0
rand_27 limit START_END D -800 -1 . 0 0 0 0
rand_28 limit START_END D -800 -1 . 0 0 0 0
rand_29 limit START_END D -800 -1 . 0 0 0 0
rand_30 limit START_END D -800 -1 . 0 0 0 0
rand_31 limit START_END D -800 -1 . 0 0 0 0
rand_32 limit START_END D -800 -1 . 0 0 0 0
rand_33 limit START_END D -800 -1 . 0 0 0 0
rand_34 limit START_END D -800 -1 . 0 0 0 0
rand_35 limit START_END D -800 -1 . 0 0 0 0
rand_36 limit START_END D -800 -1 . 0 0 0 0
rand_37 limit START_END D -800 -1 . 0 0 0 0
rand_38 limit START_END D -800 -1 . 0 0 0 0
rand_39 limit START_END D -800 -1 . 0 0 0 0
rand_40 limit START_END D -800 -1 . 0 0 0 0
rand_41 limit START_END D -800 -1 . 0 0 0 0
rand_42 limit START_END D -800 -1 . 0 0 0 0
rand_43 limit START_END D -800 -1 . 0 0 0 0
rand_44 limit START_END D -800 -1 . 0 0 0 0
rand_45 limit START_END D -800 -1 . 0 0 0 0
rand_46 limit START_END D -800 -1 . 0 0 0 0
rand_47 limit START_END D -800 -1 . 0 0 0 0
rand_48 limit START_END D -800 -1 . 0 0 0 0
rand_49 limit START_END D -800 -1 . 0 0 0 0
rand_50 limit START_END D -800 -1 . 0 0 0 0
rand_51 limit START_END D -800 -1 . 0 0 0 0
rand_52 limit START_END D -800 -1 . 0 0 0 0
rand_53 limit START_END D -800 -1 . 0 0 0 0
rand_54 limit START_END D -800 -1 . 0 0 0 0
rand_55 limit START_END D -800 -1 . 0 0 0 0
rand_56 limit START_END D -800 -1 . 0 0 0 0
rand_57 limit START_END D -800 -1 . 0 0 0 0
rand_58 limit START_END D -800 -1 . 0 0 0 0
rand_59 limit START_END D -800 -1 . 0 0 0 0
rand_60 limit START_END D -800 -1 . 0 0 0 0
rand_61 limit START_END D -800 -1 . 0 0 0 0
rand_62 limit START_END D -800 -1 . 0 0 0 0
rand_63 limit START_END D -800 -1 . 0 0 0 0
rand_64 limit START_END D -800 -1 . 0 0 0 0
rand_65 limit START_END D -800 -1 . 0 0 0 0
rand_66 limit START_END D -800 -1 . 0 0 0 0
rand_67 limit START_END D -800 -1 . 0 0 0 0
rand_68 limit START_END D -800 -1 . 0 0 0 0
rand_69 limit START_END D -800 -1 . 0 0 0 0
rand_70 limit START_END D -800 -1 . 0 0 0 0
rand_71 limit START_END D -800 -1 . 0 0 0 0
rand_72 limit START_END D -800 -1 . 0 0 0 0
rand_73 limit START_END D -800 -1 . 0 0 0 0
rand_74 limit START_END D -800 -1 . 0 0 0 0
rand_75 limit START_END D -800 -1 . 0 0 0 0
rand_76 limit START_END D -800 -1 . 0 0 0 0
rand_77 limit START_END D -800 -1 . 0 0 0 0
rand_78 limit START_END D -800 -1 . 0 0 0 0
rand_79 limit START_END D -800 -1 . 0 0 0 0
rand_80 limit START_END D -800 -1 . 0 0 0 0
rand_81 limit START_END D -800 -1 . 0 0 0 0
rand_82 limit START_END D -800 -1 . 0 0 0 0
rand_83 limit START_END D -800 -1 . 0 0 0 0
rand_84 limit START_END D -800 -1 . 0 0 0 0
rand_85 limit START_END D -800 -1 . 0 0 0 0
rand_86 limit START_END D -800 -1 . 0 0 0 0
rand_87 limit START_END D -800 -1 . 0 0 0 0
rand_88 limit START_END D -800 -1 . 0 0 0 0
rand_89 limit START_END D -800 -1 . 0 0 0 0
rand_90 limit START_END D -800 -1 . 0 0 0 0
rand_91 limit START_END D -800 -1 . 0 0 0 0
rand_92 limit START_END D -800 -1 . 0 0 0 0
rand_93 limit START_END D -800 -1 . 0 0 0 0
rand_94 limit START_END D -800 -1 . 0 0 0 0
rand_95 limit START_END D -800 -1 . 0 0 0 0
rand_96 limit START_END D -800 -1 . 0 0 0 0
rand_97 limit START_END D -800 -1 . 0 0 0 0
rand_98 limit START_END D -800 -1 . 0 0 0 0
rand_99 limit START_END D -800 -1 . 0 0 0 0
rand_100 limit START_END D -800 -1 . 0 0 0 0
rand_10 site PHO4 D -58 -51 GCACGTGG 10.4 4.0e-06 -12.429 5.398
rand_10 site PHO4 R -58 -51 CCACGTGC 10.1 1.3e-05 -11.251 4.886
rand_12 site PHO4 D -659 -652 GCATGTGC 7.6 9.0e-05 -9.316 4.046
rand_12 site PHO4 R -659 -652 GCACATGC 7.6 9.0e-05 -9.316 4.046
rand_15 site PHO4 D -34 -27 CCATGTGG 6.9 1.8e-04 -8.623 3.745
rand_15 site PHO4 R -34 -27 CCACATGG 6.8 1.9e-04 -8.568 3.721
rand_16 site PHO4 D -703 -696 GCACGTGG 10.4 4.0e-06 -12.429 5.398
rand_16 site PHO4 R -703 -696 CCACGTGC 10.1 1.3e-05 -11.251 4.886
rand_20 site PHO4 D -754 -747 CCACGTGC 10.1 1.3e-05 -11.251 4.886
rand_20 site PHO4 R -754 -747 GCACGTGG 10.4 4.0e-06 -12.429 5.398
rand_32 site PHO4 D -239 -232 CCACATGG 6.8 1.9e-04 -8.568 3.721
rand_32 site PHO4 R -239 -232 CCATGTGG 6.9 1.8e-04 -8.623 3.745
rand_45 site PHO4 D -487 -480 GCACGTGC 10.6 4.0e-06 -12.429 5.398
rand_45 site PHO4 R -487 -480 GCACGTGC 10.6 4.0e-06 -12.429 5.398
rand_51 site PHO4 D -726 -719 CCATGTGG 6.9 1.8e-04 -8.623 3.745
rand_51 site PHO4 R -726 -719 CCACATGG 6.8 1.9e-04 -8.568 3.721
rand_70 site PHO4 D -561 -554 CCATGTGC 7.1 1.7e-04 -8.680 3.770
rand_70 site PHO4 R -561 -554 GCACATGG 7.3 1.3e-04 -8.948 3.886
rand_75 site PHO4 D -734 -727 ACACGTGT 6.5 2.0e-04 -8.517 3.699
rand_75 site PHO4 R -734 -727 ACACGTGT 6.5 2.0e-04 -8.517 3.699
rand_75 site PHO4 D -726 -719 CCACATGC 7.1 1.7e-04 -8.680 3.770
rand_75 site PHO4 R -726 -719 GCATGTGG 7.4 1.3e-04 -8.948 3.886
rand_78 site PHO4 D -699 -692 CCACATGC 7.1 1.7e-04 -8.680 3.770
rand_78 site PHO4 R -699 -692 GCATGTGG 7.4 1.3e-04 -8.948 3.886
rand_83 site PHO4 D -199 -192 ACACGTGT 6.5 2.0e-04 -8.517 3.699
rand_83 site PHO4 R -199 -192 ACACGTGT 6.5 2.0e-04 -8.517 3.699
rand_93 site PHO4 D -101 -94 GCATGTGG 7.4 1.3e-04 -8.948 3.886
rand_93 site PHO4 R -101 -94 CCACATGC 7.1 1.7e-04 -8.680 3.770
rand_99 site PHO4 D -27 -20 CCACGCGC 7.2 1.4e-04 -8.874 3.854
rand_99 site PHO4 R -27 -20 GCGCGTGG 7.5 1.0e-04 -9.210 4.000
rand_1 site RIM101 D -770 -764 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_7 site RIM101 D -344 -338 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_9 site RIM101 R -450 -444 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_10 site RIM101 R -245 -239 CGCCACG 4.1 2.0e-04 -8.517 3.699
rand_10 site RIM101 R -32 -26 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_16 site RIM101 D -792 -786 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_28 site RIM101 D -192 -186 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_29 site RIM101 D -574 -568 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_30 site RIM101 D -405 -399 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_33 site RIM101 R -480 -474 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_34 site RIM101 D -508 -502 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_38 site RIM101 R -239 -233 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_39 site RIM101 D -467 -461 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_40 site RIM101 D -597 -591 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_41 site RIM101 D -28 -22 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_44 site RIM101 R -389 -383 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_50 site RIM101 D -792 -786 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_52 site RIM101 R -417 -411 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_62 site RIM101 D -298 -292 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_66 site RIM101 D -270 -264 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_70 site RIM101 R -638 -632 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_76 site RIM101 D -292 -286 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_77 site RIM101 R -555 -549 AGCCAAG 7.4 1.8e-04 -8.623 3.745
rand_85 site RIM101 R -642 -636 GGCCAAG 7.8 1.3e-04 -8.948 3.886
rand_93 site RIM101 R -105 -99 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_96 site RIM101 D -535 -529 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_97 site RIM101 D -719 -713 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_99 site RIM101 R -670 -664 TGCCAAG 8.8 8.9e-05 -9.327 4.051
rand_100 site RIM101 D -331 -325 CGCCAAG 9.5 3.1e-05 -10.382 4.509
rand_1 site MIG1 R -631 -626 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_2 site MIG1 R -581 -576 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_3 site MIG1 D -457 -452 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_8 site MIG1 D -134 -129 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_9 site MIG1 D -487 -482 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_17 site MIG1 R -387 -382 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_27 site MIG1 D -735 -730 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_27 site MIG1 D -475 -470 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_34 site MIG1 D -256 -251 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_36 site MIG1 R -290 -285 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_46 site MIG1 R -332 -327 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_51 site MIG1 D -172 -167 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_51 site MIG1 R -170 -165 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_63 site MIG1 D -125 -120 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_65 site MIG1 R -776 -771 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_73 site MIG1 D -324 -319 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_74 site MIG1 R -47 -42 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_80 site MIG1 D -788 -783 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_83 site MIG1 D -246 -241 CCCCGC 8.1 8.1e-05 -9.421 4.092
rand_96 site MIG1 D -113 -108 CCCCGG 7.5 1.6e-04 -8.740 3.796
rand_100 site MIG1 D -300 -295 CCCCGC 8.1 8.1e-05 -9.421 4.092
;
; Matrices
; matrix name ncol nrow pseudo Wmin Wmax Wrange
; 1 PHO4 8 4 0 -46.400 10.200 56.600 a:0.295 c:0.212 g:0.194 t:0.300
; 2 RIM101 7 4 0 -28.900 9.500 38.400 a:0.295 c:0.212 g:0.194 t:0.300
; 3 MIG1 6 4 0 -21.900 8.100 30.000 a:0.295 c:0.212 g:0.194 t:0.300
; Number of sequences scanned 100
; Sum of sequence lengths 80000
; N residues 0
; Matches per matrix
; matrix name matches scored
; 1 PHO4 30 0
; 2 RIM101 29 0
; 3 MIG1 21 0
; TOTAL 80 0
; Host name rsat
; Job started 2026-06-02.082752
; Job done 2026-06-02.082753
; Seconds 0.32
; user 0.32
; system 0.02
; cuser 0.66
; csystem 0.14