; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.210036_ziYSv2.tab -o $RSAT/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.210036_ziYSv2.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.210036_ziYSv2.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.210036_ziYSv2.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	31
;

; assembly # 1	seed: agtgaa	5 assembled patterns	length 9
;  alignt	  rev_cpl	score
aagtga...	...tcactt	1.19
aagtgaa..	..ttcactt	1.12
.agtgaa..	..ttcact.	2.73
.agtgaaa.	.tttcact.	2.39
.agtgaaag	ctttcact.	0.37
aagtgaaag	ctttcactt	2.73	best consensus

; assembly # 2	seed: actcac	3 assembled patterns	length 7
;alignt	rev_cpl	score
actcac.	.gtgagt	2.50
actcacc	ggtgagt	2.08
.ctcacc	ggtgag.	0.58
actcacc	ggtgagt	2.50	best consensus

; assembly # 3	seed: cactcg	3 assembled patterns	length 7
;alignt	rev_cpl	score
gcactc.	.gagtgc	0.32
gcactcg	cgagtgc	0.00
.cactcg	cgagtg.	1.38
gcactcg	cgagtgc	1.38	best consensus

; assembly # 4	seed: cagttc	2 assembled patterns	length 7
;alignt	rev_cpl	score
cagttc.	.gaactg	1.23
.agttcg	cgaact.	0.94
cagttcg	cgaactg	1.23	best consensus

; assembly # 5	seed: cgcaca	4 assembled patterns	length 8
; alignt	 rev_cpl	score
ctcgca..	..tgcgag	0.64
ctcgcac.	.gtgcgag	0.42
.tcgcac.	.gtgcga.	0.35
..cgcaca	tgtgcg..	1.08
ctcgcaca	tgtgcgag	1.08	best consensus

; assembly # 6	seed: ggagaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
ggagaa	ttctcc	0.95
ggagaa	ttctcc	0.95	best consensus

; assembly # 7	seed: aacggt	1 assembled patterns	length 6
;alignt	rev_cpl	score
aacggt	accgtt	0.68
aacggt	accgtt	0.68	best consensus

; assembly # 8	seed: aacgcg	1 assembled patterns	length 6
;alignt	rev_cpl	score
aacgcg	cgcgtt	0.46
aacgcg	cgcgtt	0.46	best consensus

; assembly # 9	seed: acgtccga	1 assembled patterns	length 8
; alignt	 rev_cpl	score
acgtccga	tcggacgt	0.26
acgtccga	tcggacgt	0.26	best consensus

; assembly # 10	seed: cacctgg	1 assembled patterns	length 7
;alignt	rev_cpl	score
cacctgg	ccaggtg	0.21
cacctgg	ccaggtg	0.21	best consensus

; assembly # 11	seed: cgcgtc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cgcgtc	gacgcg	0.18
cgcgtc	gacgcg	0.18	best consensus

; assembly # 12	seed: aaaccag	2 assembled patterns	length 7
;alignt	rev_cpl	score
aaaccag	ctggttt	0.18
.aaccag	ctggtt.	0.08
aaaccag	ctggttt	0.18	best consensus

; assembly # 13	seed: cagcgc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cagcgc	gcgctg	0.15
cagcgc	gcgctg	0.15	best consensus

; assembly # 14	seed: cacgag	1 assembled patterns	length 6
;alignt	rev_cpl	score
cacgag	ctcgtg	0.13
cacgag	ctcgtg	0.13	best consensus

; assembly # 15	seed: cagcccaa	1 assembled patterns	length 8
; alignt	 rev_cpl	score
cagcccaa	ttgggctg	0.09
cagcccaa	ttgggctg	0.09	best consensus

; assembly # 16	seed: cggcag	2 assembled patterns	length 7
;alignt	rev_cpl	score
gcggca.	.tgccgc	0.01
.cggcag	ctgccg.	0.04
gcggcag	ctgccgc	0.04	best consensus

; assembly # 17	seed: aaggac	1 assembled patterns	length 6
;alignt	rev_cpl	score
aaggac	gtcctt	0.02
aaggac	gtcctt	0.02	best consensus
; Host name	rsat
; Job started	2026-06-02.210041
; Job done	2026-06-02.210043
; Seconds	1.88
;	user	1.88
;	system	0.01
;	cuser	0
;	csystem	0