; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.214645_NYFFii.tab -o $RSAT/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.214645_NYFFii.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.214645_NYFFii.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/02/oligo-analysis_2026-06-02.214645_NYFFii.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	11
;

; assembly # 1	seed: acggttca	9 assembled patterns	length 9
;  alignt	  rev_cpl	score
acggttca.	.tgaaccgt	3.38
acggttc..	..gaaccgt	2.85
acggtt...	...aaccgt	2.13
.cggttcaa	ttgaaccg.	3.09
.cggttca.	.tgaaccg.	2.52
.cggttc..	..gaaccg.	2.03
..ggttcaa	ttgaacc..	0.37
..ggttca.	.tgaacc..	0.30
...gttcaa	ttgaac...	0.15
acggttcaa	ttgaaccgt	3.38	best consensus

; assembly # 2	seed: ttcgcgaa	1 assembled patterns	length 8
; alignt	 rev_cpl	score
ttcgcgaa	ttcgcgaa	0.12
ttcgcgaa	ttcgcgaa	0.12	best consensus

; assembly # 3	seed: cgaattcg	1 assembled patterns	length 8
; alignt	 rev_cpl	score
cgaattcg	cgaattcg	0.01
cgaattcg	cgaattcg	0.01	best consensus
; Host name	rsat
; Job started	2026-06-02.214650
; Job done	2026-06-02.214650
; Seconds	0.21
;	user	0.21
;	system	0.01
;	cuser	0
;	csystem	0