position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Analisis1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 307 Sum of sequence lengths 138806 Min sequence length 0 Max sequence length 1000 Average sequence length 452 Possible positions 138806 Oligonucleotide statistics: Total occurrences 109911 Position interval parameters: Position interval 20 Number of windows 50 Total positions 138806 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1 20 2 -24 [-479,-460] -469.5 2 28 3 -23 [-459,-440] -449.5 2 40 4 -22 [-439,-420] -429.5 2 40 5 -21 [-419,-400] -409.5 2 40 6 -20 [-399,-380] -389.5 5 64 7 -19 [-379,-360] -369.5 6 116 8 -18 [-359,-340] -349.5 14 186 9 -17 [-339,-320] -329.5 28 450 10 -16 [-319,-300] -309.5 46 773 11 -15 [-299,-280] -289.5 66 1183 12 -14 [-279,-260] -269.5 85 1491 13 -13 [-259,-240] -249.5 119 2058 14 -12 [-239,-220] -229.5 155 2831 15 -11 [-219,-200] -209.5 186 3498 16 -10 [-199,-180] -189.5 231 4256 17 -9 [-179,-160] -169.5 249 4837 18 -8 [-159,-140] -149.5 282 5354 19 -7 [-139,-120] -129.5 298 5783 20 -6 [-119,-100] -109.5 301 5999 21 -5 [-99,-80] -89.5 303 6048 22 -4 [-79,-60] -69.5 305 6069 23 -3 [-59,-40] -49.5 307 6114 24 -2 [-39,-20] -29.5 307 6140 25 -1 [-19,0] -9.5 307 6140 26 0 [1,20] 10.5 307 6140 27 1 [21,40] 30.5 307 6140 28 2 [41,60] 50.5 307 6112 29 3 [61,80] 70.5 305 6068 30 4 [81,100] 90.5 303 6046 31 5 [101,120] 110.5 301 5998 32 6 [121,140] 130.5 296 5769 33 7 [141,160] 150.5 280 5321 34 8 [161,180] 170.5 247 4820 35 9 [181,200] 190.5 228 4205 36 10 [201,220] 210.5 185 3468 37 11 [221,240] 230.5 152 2795 38 12 [241,260] 250.5 116 2020 39 13 [261,280] 270.5 81 1475 40 14 [281,300] 290.5 66 1163 41 15 [301,320] 310.5 45 751 42 16 [321,340] 330.5 27 434 43 17 [341,360] 350.5 14 179 44 18 [361,380] 370.5 6 114 45 19 [381,400] 390.5 5 62 46 20 [401,420] 410.5 2 40 47 21 [421,440] 430.5 2 40 48 22 [441,460] 450.5 2 40 49 23 [461,480] 470.5 2 28 50 24 [481,500] 490.5 1 20 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 27397 | 91.2 | 49 | 2.4e-04 | 0.00096 | 3.02 | 1 | 2 | 6 | 6 | 15 | 10 | 10 | 25 | 36 | 86 | 147 | 179 | 267 | 457 | 595 | 693 | 770 | 872 | 1020 | 1101 | 1229 | 1251 | 1209 | 1249 | 1273 | 1220 | 1199 | 1247 | 1248 | 1202 | 1207 | 1229 | 1149 | 980 | 948 | 783 | 691 | 523 | 409 | 281 | 213 | 151 | 72 | 41 | 25 | 16 | 16 | 11 | 13 | 8 | 7 |
| g | g | 26970 | 80.2 | 49 | 3.3e-03 | 0.013 | 1.88 | 2 | 6 | 8 | 20 | 9 | 10 | 20 | 26 | 42 | 63 | 116 | 233 | 265 | 389 | 561 | 692 | 854 | 966 | 1081 | 1163 | 1239 | 1185 | 1163 | 1164 | 1168 | 1168 | 1183 | 1141 | 1199 | 1185 | 1200 | 1109 | 1116 | 1030 | 908 | 825 | 703 | 537 | 396 | 286 | 200 | 129 | 81 | 45 | 30 | 14 | 11 | 13 | 7 | 6 | 5 |
| t | t | 28025 | 62.0 | 49 | 1.0e-01 | 0.41 | 0.39 | 3 | 5 | 6 | 8 | 7 | 10 | 17 | 24 | 35 | 106 | 161 | 214 | 294 | 393 | 575 | 720 | 882 | 978 | 1025 | 1129 | 1146 | 1170 | 1270 | 1221 | 1241 | 1307 | 1252 | 1351 | 1230 | 1176 | 1237 | 1232 | 1154 | 1125 | 1013 | 886 | 674 | 574 | 389 | 282 | 206 | 131 | 77 | 25 | 24 | 12 | 7 | 5 | 8 | 10 | 1 |
| a | a | 27519 | 52.0 | 49 | 3.6e-01 | 1.4 | -0.16 | 4 | 7 | 8 | 6 | 9 | 10 | 8 | 21 | 35 | 71 | 154 | 253 | 328 | 448 | 530 | 698 | 860 | 977 | 1093 | 1186 | 1147 | 1202 | 1187 | 1240 | 1199 | 1185 | 1254 | 1161 | 1187 | 1245 | 1145 | 1186 | 1127 | 1040 | 897 | 817 | 705 | 578 | 443 | 290 | 248 | 149 | 86 | 32 | 15 | 12 | 6 | 11 | 12 | 4 | 7 |
Host name rsat Job started 2026-06-02.215620 Job done 2026-06-02.215621 Seconds 0.84 user 0.84 system 0 cuser 0 ; csystem 0