/var/www/html/rsat/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Analisis1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	307
	Sum of sequence lengths      	138806
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	452
	Possible positions           	138499
 Oligonucleotide statistics:
	Total occurrences    	109661
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	138499
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	1	20
	2	-24	[-479,-460]	-469.5	2	28
	3	-23	[-459,-440]	-449.5	2	40
	4	-22	[-439,-420]	-429.5	2	40
	5	-21	[-419,-400]	-409.5	2	40
	6	-20	[-399,-380]	-389.5	5	64
	7	-19	[-379,-360]	-369.5	6	116
	8	-18	[-359,-340]	-349.5	14	186
	9	-17	[-339,-320]	-329.5	28	450
	10	-16	[-319,-300]	-309.5	46	773
	11	-15	[-299,-280]	-289.5	66	1183
	12	-14	[-279,-260]	-269.5	85	1491
	13	-13	[-259,-240]	-249.5	119	2058
	14	-12	[-239,-220]	-229.5	155	2831
	15	-11	[-219,-200]	-209.5	186	3498
	16	-10	[-199,-180]	-189.5	231	4256
	17	-9	[-179,-160]	-169.5	249	4837
	18	-8	[-159,-140]	-149.5	282	5354
	19	-7	[-139,-120]	-129.5	298	5783
	20	-6	[-119,-100]	-109.5	301	5999
	21	-5	[-99,-80]	-89.5	303	6048
	22	-4	[-79,-60]	-69.5	305	6069
	23	-3	[-59,-40]	-49.5	307	6114
	24	-2	[-39,-20]	-29.5	307	6140
	25	-1	[-19,0]	-9.5	307	6140
	26	0	[1,20]	10.5	307	6140
	27	1	[21,40]	30.5	307	6140
	28	2	[41,60]	50.5	307	6110
	29	3	[61,80]	70.5	305	6066
	30	4	[81,100]	90.5	303	6044
	31	5	[101,120]	110.5	301	5993
	32	6	[121,140]	130.5	296	5753
	33	7	[141,160]	150.5	279	5288
	34	8	[161,180]	170.5	246	4801
	35	9	[181,200]	190.5	228	4162
	36	10	[201,220]	210.5	185	3435
	37	11	[221,240]	230.5	152	2759
	38	12	[241,260]	250.5	112	1985
	39	13	[261,280]	270.5	81	1460
	40	14	[281,300]	290.5	65	1142
	41	15	[301,320]	310.5	44	733
	42	16	[321,340]	330.5	26	421
	43	17	[341,360]	350.5	14	171
	44	18	[361,380]	370.5	6	113
	45	19	[381,400]	390.5	5	59
	46	20	[401,420]	410.5	2	40
	47	21	[421,440]	430.5	2	40
	48	22	[441,460]	450.5	2	40
	49	23	[461,480]	470.5	2	27
	50	24	[481,500]	490.5	1	19

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 7994 108.5 49 2.2e-06 3.5e-05 4.46 1 1 0 2 1 0 5 5 2 42 49 58 73 95 168 189 251 276 274 294 291 321 377 373 378 431 360 398 340 353 353 365 327 341 304 251 176 173 110 66 58 26 21 0 5 3 1 0 2 5 0
cc cc 6909 90.2 49 3.1e-04 0.0049 2.31 2 0 0 0 4 1 1 5 7 19 29 41 58 135 145 149 158 199 253 279 314 338 296 342 350 326 326 327 307 312 298 318 290 232 240 174 196 120 110 68 46 34 22 10 4 4 6 6 6 2 2
aa aa 7666 76.2 49 7.7e-03 0.12 0.91 3 4 4 1 0 0 1 3 15 12 50 89 90 140 132 169 217 272 300 339 306 344 332 368 325 338 378 321 321 360 298 329 299 299 241 226 196 185 125 84 77 34 25 4 3 3 1 1 3 0 2
gg gg 6489 63.1 49 8.4e-02 1.3 -0.13 4 0 3 10 1 2 6 4 10 11 15 62 48 79 117 143 189 228 262 290 336 285 303 304 305 267 307 278 298 269 294 267 268 253 221 194 172 118 85 59 44 30 22 11 7 4 3 3 0 0 2
ct ct 6546 57.4 49 1.9e-01 3.1 -0.49 5 0 1 1 4 1 5 6 9 26 40 44 70 105 134 156 181 218 229 264 294 301 298 291 281 323 290 360 302 254 274 314 266 247 237 178 141 116 92 76 35 39 17 9 8 4 3 0 0 2 0
cg cg 6225 54.2 49 2.8e-01 4.5 -0.66 6 2 1 5 4 4 4 6 12 19 36 45 53 98 148 184 189 199 244 233 282 260 254 269 260 259 240 242 280 308 299 269 269 228 218 197 176 138 81 71 52 38 15 14 7 2 2 2 3 2 2
ga ga 6666 52.0 49 3.6e-01 5.7 -0.76 7 3 0 4 3 2 4 8 3 14 28 62 80 98 134 187 232 232 304 285 297 283 255 287 278 298 298 269 281 308 296 277 268 235 217 201 179 138 122 72 44 32 20 12 5 2 0 3 2 2 2
ag ag 6416 46.1 49 5.9e-01 9.5 -0.98 8 2 2 1 3 0 2 4 6 13 27 52 78 109 130 145 211 258 275 305 285 297 277 267 267 289 283 258 279 291 252 251 267 253 200 187 159 126 101 72 46 35 21 12 2 1 4 6 3 1 1
tc tc 6714 45.3 49 6.2e-01 10 -1.00 9 2 3 2 2 1 0 7 9 24 36 32 58 98 148 169 198 208 250 267 314 282 318 308 296 278 316 339 316 268 298 299 278 254 249 213 171 131 88 66 46 37 13 7 3 3 3 1 2 2 1
gt gt 6347 42.1 49 7.5e-01 12 -1.08 10 3 2 3 1 2 4 8 18 16 33 54 64 85 140 177 204 244 245 276 269 260 271 271 257 264 258 288 285 266 288 253 251 259 228 225 168 128 88 70 45 29 20 11 4 2 2 3 3 2 0
tg tg 7786 40.6 49 8.0e-01 13 -1.11 11 2 3 3 1 5 8 10 15 20 38 72 88 121 160 212 255 298 296 335 332 342 343 306 348 358 343 370 337 310 367 315 308 292 265 236 188 156 112 82 52 27 20 10 13 5 2 1 1 3 0
ac ac 6306 39.6 49 8.3e-01 13 -1.12 12 0 0 3 4 3 4 8 6 23 39 48 81 102 127 181 198 202 247 243 264 270 262 301 284 277 252 266 293 283 286 304 238 220 213 181 156 118 113 61 56 42 20 11 4 3 1 2 3 0 3
gc gc 7403 38.6 49 8.6e-01 14 -1.14 13 0 3 3 4 4 6 6 11 22 40 55 73 127 170 185 229 262 270 312 337 357 334 302 328 339 320 306 334 341 321 312 326 279 238 196 177 146 93 81 59 34 16 10 14 6 6 4 2 2 1
ca ca 7656 38.5 49 8.6e-01 14 -1.14 14 0 4 0 3 4 0 8 8 22 42 49 86 119 168 204 242 256 294 325 339 352 361 347 381 312 343 318 359 328 336 327 320 266 246 226 170 142 116 65 79 37 17 7 5 6 5 3 4 2 3
ta ta 5470 29.4 49 9.9e-01 16 -1.20 15 0 0 1 3 4 4 2 9 20 38 52 75 79 99 150 178 196 205 233 209 225 232 234 219 240 233 244 236 244 218 250 238 229 194 176 133 109 72 63 48 38 20 8 3 0 1 3 3 0 0
at at 7068 27.5 49 9.9e-01 16 -1.20 16 1 2 1 2 7 1 6 8 23 38 64 79 97 141 203 234 245 271 299 292 291 316 304 323 281 341 316 293 311 309 301 318 262 240 218 187 142 98 69 64 34 18 1 6 4 0 2 3 2 0 
 Host name	rsat
 Job started	2026-06-02.215622
 Job done	2026-06-02.215623
 Seconds	0.89
	user	0.89
	system	0.02
	cuser	0
;	csystem	0