RSAT - peak-motifs result

Analysis: Analisis1 (02/06/2026 21:57)

peak-motifs  -v 1 -title Analisis1 -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gaaaaggaaa (sig=12.68; e-value=2.1e-13) RC: tttccttttc oligos_6nt_mkv3_m2 assembly: catgcatg (sig=7.80; e-value=1.6e-08) RC: catgcatg oligos_6nt_mkv3_m3 assembly: acgcacgca (sig=6.77; e-value=1.7e-07) RC: tgcgtgcgt oligos_6nt_mkv3_m4 assembly: cgtacgtac (sig=5.55; e-value=2.8e-06) RC: gtacgtacg oligos_6nt_mkv3_m5 assembly: caatca (sig=2.37; e-value=0.0043) RC: tgattg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: aaaaggaaa (sig=2.57; e-value=0.0027) RC: tttcctttt oligos_7nt_mkv4_m2 assembly: aagggaa (sig=1.46; e-value=0.035) RC: ttccctt oligos_7nt_mkv4_m3 assembly: tacagta (sig=1.00; e-value=0.1) RC: tactgta oligos_7nt_mkv4_m4 assembly: aaaaata (sig=0.93; e-value=0.12) RC: tattttt oligos_7nt_mkv4_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=12.68; evalue=2.1e-13 mrrAAAAGGAAarr YYTTTCCTTTTYYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 115 (37.46%) Max nb of predicted sites per peak: 9  (chr1H:409978747-409979345) Mean nb of predicted sites per peak: 2.01	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=7.80; evalue=1.6e-08 wrCATGCATGcw WGCATGCATGYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (16.94%) Max nb of predicted sites per peak: 24  (chr3H:65977830-65978287) Mean nb of predicted sites per peak: 3.56	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=6.77; evalue=1.7e-07 gsaCGCACGCacs SGTGCGTGCGTSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 51 (16.61%) Max nb of predicted sites per peak: 9  (chr1H:482690506-482691092) Mean nb of predicted sites per peak: 1.78	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=5.55; evalue=2.8e-06 ymyGTACGTACrt AYGTACGTACRKR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 34 (11.07%) Max nb of predicted sites per peak: 15  (chr1H:482690506-482691092) Mean nb of predicted sites per peak: 3.38	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=2.37; evalue=0.0043 wbCAATCAwr YWTGATTGVW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 65 (21.17%) Max nb of predicted sites per peak: 6  (chr5H:667302714-667303387) Mean nb of predicted sites per peak: 1.52	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=2.57; evalue=0.0027 rrAAAAGGAAAar YTTTTCCTTTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 110 (35.83%) Max nb of predicted sites per peak: 12  (chr1H:409978747-409979345) Mean nb of predicted sites per peak: 2.05	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=1.46; evalue=0.035 rrAAGGGAArr YYTTCCCTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (25.73%) Max nb of predicted sites per peak: 10  (chr6H:25148930-25149401) Mean nb of predicted sites per peak: 2.27	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=1.00; evalue=0.1 wgTACAGTAvt ABTACTGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (7.17%) Max nb of predicted sites per peak: 4  (chr6H:580195197-580195821) Mean nb of predicted sites per peak: 1.82	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=0.93; evalue=0.12 mrAAAAATAww WWTATTTTTYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (16.94%) Max nb of predicted sites per peak: 4  (chr5H:154999048-154999453) Mean nb of predicted sites per peak: 1.54	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab] [bed]

Command:  peak-motifs  -v 1 -title Analisis1 -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -source getfasta -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt

Warning: Not a single pattern was found in file tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/06/02/peak-motifs.2026-06-02.215618_2026-06-02.215618_Ihs9Yt/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab