RSAT - peak-motifs result

Analysis: prot (02/06/2026 22:41)

peak-motifs  -v 1 -title prot -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: cttctc (sig=2.04; e-value=0.0091) RC: gagaag oligos_6nt_mkv2_m2 assembly: atttta (sig=0.90; e-value=0.13) RC: taaaat oligos_6nt_mkv2_m3 assembly: agtaca (sig=0.80; e-value=0.16) RC: tgtact oligos_6nt_mkv2_m4 assembly: ctgctc (sig=0.50; e-value=0.32) RC: gagcag oligos_6nt_mkv2_m5 assembly: cgccca (sig=0.46; e-value=0.35) RC: tgggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: cttctcc (sig=0.29; e-value=0.51) RC: ggagaag oligos_7nt_mkv2_m2 assembly: ccttgta (sig=0.18; e-value=0.66) RC: tacaagg oligos_7nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=2.04; evalue=0.0091 wbCTTCTCsw WSGAGAAGVW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (61.54%) Max nb of predicted sites per peak: 6  (FBgn0261394|Prosalpha3) Mean nb of predicted sites per peak: 2.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=0.90; evalue=0.13 wmATTTTAwk MWTAAAATKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (76.92%) Max nb of predicted sites per peak: 4  (FBgn0263121|Prosalpha1) Mean nb of predicted sites per peak: 1.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.80; evalue=0.16 stAGTACAwg CWTGTACTAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (65.38%) Max nb of predicted sites per peak: 3  (FBgn0265606|Prosalpha4T1) Mean nb of predicted sites per peak: 1.59	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.50; evalue=0.32 sgCTGCTCck MGGAGCAGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (73.08%) Max nb of predicted sites per peak: 4  (FBgn0036465|Rpn12R) Mean nb of predicted sites per peak: 1.79	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.46; evalue=0.35 byCGCCCArs SYTGGGCGRV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (61.54%) Max nb of predicted sites per peak: 4  (FBgn0011327|Uch-L5) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=0.29; evalue=0.51 dyCTTCTCCwk MWGGAGAAGRH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (34.62%) Max nb of predicted sites per peak: 4  (FBgn0261394|Prosalpha3) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=0.18; evalue=0.66 bkCCTTGTAsh DSTACAAGGMV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (42.31%) Max nb of predicted sites per peak: 3  (FBgn0002787|Rpn8) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title prot -i $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD

Warning: Not a single pattern was found in file tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/06/02/peak-motifs.2026-06-02.224106_2026-06-02.224106_d2sShD/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab