; dna-pattern -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/05/dna-pattern_2026-06-05.153050_LtFIlT.pat -i $RSAT/public_html/tmp/www-data/2026/06/05/retrieve-seq_2026-06-05.152902_lTcSeF.fasta.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file $RSAT/public_html/tmp/www-data/2026/06/05/retrieve-seq_2026-06-05.152902_lTcSeF.fasta.fasta
; Input format fasta
; Pattern file $RSAT/public_html/tmp/www-data/2026/06/05/dna-pattern_2026-06-05.153050_LtFIlT.pat
; Search method regexp
; Threshold 0
; Allowed substitutions 0
; Return fields
; sites
; limits
; Patterns
; seq id score
; aacttgtaaccattggtaacacattaaccgttaggcattcacaatttccccgattactcg aacttgtaaccattggtaacacattaaccgttaggcattcacaatttccccgattactcg 1
; ttggccattgttcttgccttttggtattcgttgtttctagtacgtagtgaacctatgagg ttggccattgttcttgccttttggtattcgttgtttctagtacgtagtgaacctatgagg 1
; aacaaagaagatgttcagtagtatccatgtatagatacggataccaacgtagtacttgaa aacaaagaagatgttcagtagtatccatgtatagatacggataccaacgtagtacttgaa 1
; gttgtcaacattccttggaggaaaaatgtagtcgtcgtcgtcaaatgccaacacgagctg gttgtcaacattccttggaggaaaaatgtagtcgtcgtcgtcaaatgccaacacgagctg 1
; tgtacgtgctggtacattgaccacaaattcgtccttgttctcaaatgtggggaaaataca tgtacgtgctggtacattgaccacaaattcgtccttgttctcaaatgtggggaaaataca 1
; tcttaattctggatcaaggaatttggtactggtctgagacctgctactactaccagcatc tcttaattctggatcaaggaatttggtactggtctgagacctgctactactaccagcatc 1
; aatgtagctgaccagctgctgtactatttctattcttttaaagagtatatgcgttctaga aatgtagctgaccagctgctgtactatttctattcttttaaagagtatatgcgttctaga 1
; agcaactaacaaaattagttgtaaaagtttttttaaatatatcttcctatctactcctta agcaactaacaaaattagttgtaaaagtttttttaaatatatcttcctatctactcctta 1
; cccttataagtgtataccactactgtttatagcgcagcagcggatcttctcaagacttag cccttataagtgtataccactactgtttatagcgcagcagcggatcttctcaagacttag 1
; ggtcctgttcatctacagtacaacccgcaacccggtataaacagtgtcatccgtactgta ggtcctgttcatctacagtacaacccgcaacccggtataaacagtgtcatccgtactgta 1
; gcaccgaccctgatatgtcgttaagtacccgttatgtgtgaacagtaaatatccgctacg gcaccgaccctgatatgtcgttaagtacccgttatgtgtgaacagtaaatatccgctacg 1
; aatagttcaacccgttaccagatacccgttatagcatgttagcgagttagcactgtagca aatagttcaacccgttaccagatacccgttatagcatgttagcgagttagcactgtagca 1
; gacacccgttataaaaaactcgcccgtgcgaacgcacgggctctccctctagttacccta gacacccgttataaaaaactcgcccgtgcgaacgcacgggctctccctctagttacccta 1
; ttatgttcttcctcaagttatatctcctgattgtataattctatgtgtctagataaaata ttatgttcttcctcaagttatatctcctgattgtataattctatgtgtctagataaaata 1
; aatatttatgagaccgttgactttatgaagaatcttccttttatcttcaatttagagaat aatatttatgagaccgttgactttatgaagaatcttccttttatcttcaatttagagaat 1
; taagacttgtttgaaatgaagaaaagaaagaaagaggttaaagatgatttattgttttta taagacttgtttgaaatgaagaaaagaaagaaagaggttaaagatgatttattgttttta 1
; agccaacatcaaggcctataattttttaaaccaacatcaatctctagaagtatcccaatt agccaacatcaaggcctataattttttaaaccaacatcaatctctagaagtatcccaatt 1
; ttttttgtcgacaattggcgaattgtgcctccctatatctaaatcctctaactccgcccc ttttttgtcgacaattggcgaattgtgcctccctatatctaaatcctctaactccgcccc 1
; tactttttagtatatgaaaaataaattggtggattttacggacctggctacggctaggtc tactttttagtatatgaaaaataaattggtggattttacggacctggctacggctaggtc 1
; cgatttagcgcgcttcattccacagttgatttgatgttcaagcagaaagtattgaatcaa cgatttagcgcgcttcattccacagttgatttgatgttcaagcagaaagtattgaatcaa 1
; ttgatgtgatgtgatcgttaaaattttctggatgtttacaatcccatgtctagcttctca ttgatgtgatgtgatcgttaaaattttctggatgtttacaatcccatgtctagcttctca 1
; atttggaaagattatgcacatgatagggtgatattgaaatgagagccatgtattcttctt atttggaaagattatgcacatgatagggtgatattgaaatgagagccatgtattcttctt 1
; gctaggtagctctcatcttatagttgtactaaggggctgtttggtgtggctttctagggg gctaggtagctctcatcttatagttgtactaaggggctgtttggtgtggctttctagggg 1
; ctccgactctatccatagtttactggttagcattgtttcacaatttagcaaaaatatact ctccgactctatccatagtttactggttagcattgtttcacaatttagcaaaaatatact 1
; ccaacttcgataatctaaaaatgaaccgagagagccggtgaaactaatatggatgacttc ccaacttcgataatctaaaaatgaaccgagagagccggtgaaactaatatggatgacttc 1
; accgcctccttattacagtatgtagtagtgctatagtgatgctaggagccggagtccaat accgcctccttattacagtatgtagtagtgctatagtgatgctaggagccggagtccaat 1
; agagccacgccaaacaagctcttataaaacgacttactgtacggtcctgccgagtctaca agagccacgccaaacaagctcttataaaacgacttactgtacggtcctgccgagtctaca 1
; actccgcgtgagccgtggaagcggaacgtgccccctgttggctgtttatcgccaccaaac actccgcgtgagccgtggaagcggaacgtgccccctgttggctgtttatcgccaccaaac 1
; cagcactccagctcgttctgagctgtgcagctgccgcgagacttcttcccgcgcttcccg cagcactccagctcgttctgagctgtgcagctgccgcgagacttcttcccgcgcttcccg 1
; gcctcgctaacaggccttcccttcttttttctatataaaagcggaggacgcctcttcttc gcctcgctaacaggccttcccttcttttttctatataaaagcggaggacgcctcttcttc 1
; ctctacttctgcccaacggcccaacccctcctaagctttgccaagcttgcttttgtgtac ctctacttctgcccaacggcccaacccctcctaagctttgccaagcttgcttttgtgtac 1
; tctgatcgagattttgcttaccaacaaacaaaactaacacggattcgcacagcccaaagc tctgatcgagattttgcttaccaacaaacaaaactaacacggattcgcacagcccaaagc 1
; acaacgagctcgcacagtccggctgctgctgctgctgcacaaacaacggactctcacagc acaacgagctcgcacagtccggctgctgctgctgctgcacaaacaacggactctcacagc 1
; ccggcgaccggctcgcagcc ccggcgaccggctcgcagcc 1
;
; Matching positions
; PatID Strand Pattern SeqID Start End matching_seq Score
; Host name rsat
; Job started 2026-06-05.153051
; Job done 2026-06-05.153051
; Seconds 0.08
; user 0.08
; system 0
; cuser 0
; csystem 0