; pattern-assembly -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/05/oligo-analysis_2026-06-05.094204_xR8qdu.tab -o $RSAT/public_html/tmp/www-data/2026/06/05/oligo-analysis_2026-06-05.094204_xR8qdu.asmb ; Input file /var/www/html/rsat/public_html/tmp/www-data/2026/06/05/oligo-analysis_2026-06-05.094204_xR8qdu.tab ; Output file /var/www/html/rsat/public_html/tmp/www-data/2026/06/05/oligo-analysis_2026-06-05.094204_xR8qdu.asmb ; Input score column 8 ; Output score column 0 ; Strand-insensitive assembly ; Max flanking bases 1 ; Max substitutions 1 ; Min matches 0 ; Min weight 0 ; Max assembly size 50 ; Max assembly width 0 ; Top number of patterns 50 ; Number of input patterns 131 ; THE ASSEMBLY WAS RESTRICTED TO THE 50 TOP PATTERNS ; ;Number of patterns = 131. Exceeds top number = 50. Only the top 50 patterns will be assembled. ; assembly # 1 seed: cacgtg 7 assembled patterns length 12 ; alignt rev_cpl score tgacac...... ......gtgtca 4.67 .gacacg..... .....cgtgtc. 10.39 ..acacgt.... ....acgtgt.. 12.79 ...cacgtg... ...cacgtg... 13.09 ....acgtgt.. ..acacgt.... 12.79 .....cgtgtc. .gacacg..... 10.39 ......gtgtca tgacac...... 4.67 tgacacgtgtca tgacacgtgtca 13.09 best consensus ; assembly # 2 seed: ttaaaa 41 assembled patterns length 46 ; alignt rev_cpl score tataaa........................................ ........................................tttata 0.48 .ataaaa....................................... .......................................ttttat. 5.87 ..taaaat...................................... ......................................atttta.. 5.85 ...aaaata..................................... .....................................tatttt... 6.35 ....aaatat.................................... ....................................atattt.... 4.58 .....aatata................................... ...................................tatatt..... 1.47 ......atataa.................................. ..................................ttatat...... 3.32 .......tataat................................. .................................attata....... 1.26 ........ataata................................ ................................tattat........ 2.58 .........taataa............................... ...............................ttatta......... 5.42 ..........aataaa.............................. ..............................tttatt.......... 5.37 ...........ataaat............................. .............................atttat........... 2.32 ............taaatt............................ ............................aattta............ 0.95 .............aaatta........................... ...........................taattt............. 3.60 ..............aattaa.......................... ..........................ttaatt.............. 2.55 ...............attaaa......................... .........................tttaat............... 4.47 ................ttaaaa........................ ........................ttttaa................ 11.87 .................taaaaa....................... .......................ttttta................. 10.91 ..................aaaaat...................... ......................attttt.................. 8.06 ...................aaaatt..................... .....................aatttt................... 6.99 ....................aaattt.................... ....................aaattt.................... 4.75 .....................aatttt................... ...................aaaatt..................... 6.99 ......................attttt.................. ..................aaaaat...................... 8.06 .......................ttttta................. .................taaaaa....................... 10.91 ........................ttttaa................ ................ttaaaa........................ 11.87 .........................tttaat............... ...............attaaa......................... 4.47 ..........................ttaatt.............. ..............aattaa.......................... 2.55 ...........................taattt............. .............aaatta........................... 3.60 ............................aattta............ ............taaatt............................ 0.95 .............................atttat........... ...........ataaat............................. 2.32 ..............................tttatt.......... ..........aataaa.............................. 5.37 ...............................ttatta......... .........taataa............................... 5.42 ................................tattat........ ........ataata................................ 2.58 .................................attata....... .......tataat................................. 1.26 ..................................ttatat...... ......atataa.................................. 3.32 ...................................tatatt..... .....aatata................................... 1.47 ....................................atattt.... ....aaatat.................................... 4.58 .....................................tatttt... ...aaaata..................................... 6.35 ......................................atttta.. ..taaaat...................................... 5.85 .......................................ttttat. .ataaaa....................................... 5.87 ........................................tttata tataaa........................................ 0.48 tataaaatataataaattaaaaatttttaatttattatattttata tataaaatataataaattaaaaatttttaatttattatattttata 11.87 best consensus ; assembly # 3 seed: acgtgg 7 assembled patterns length 12 ; alignt rev_cpl score tgacac...... ......gtgtca 4.67 .gacacg..... .....cgtgtc. 10.39 ..acacgt.... ....acgtgt.. 12.79 ...cacgtg... ...cacgtg... 13.09 ....acgtgg.. ..ccacgt.... 10.14 .....cgtggc. .gccacg..... 3.93 ......gtggcg cgccac...... 0.37 tgacacgtggcg cgccacgtgtca 13.09 best consensus ; assembly # 4 seed: aaaaaa 42 assembled patterns length 47 ; alignt rev_cpl score tataaa......................................... .........................................tttata 0.48 .ataaaa........................................ ........................................ttttat. 5.87 ..taaaat....................................... .......................................atttta.. 5.85 ...aaaata...................................... ......................................tatttt... 6.35 ....aaatat..................................... .....................................atattt.... 4.58 .....aatata.................................... ....................................tatatt..... 1.47 ......atataa................................... ...................................ttatat...... 3.32 .......tataat.................................. ..................................attata....... 1.26 ........ataata................................. .................................tattat........ 2.58 .........taataa................................ ................................ttatta......... 5.42 ..........aataaa............................... ...............................tttatt.......... 5.37 ...........ataaat.............................. ..............................atttat........... 2.32 ............taaatt............................. .............................aattta............ 0.95 .............aaatta............................ ............................taattt............. 3.60 ..............aattaa........................... ...........................ttaatt.............. 2.55 ...............attaaa.......................... ..........................tttaat............... 4.47 ................ttaaaa......................... .........................ttttaa................ 11.87 .................taaaaa........................ ........................ttttta................. 10.91 ..................aaaaaa....................... .......................tttttt.................. 6.32 ...................aaaaat...................... ......................attttt................... 8.06 ....................aaaatt..................... .....................aatttt.................... 6.99 .....................aaattt.................... ....................aaattt..................... 4.75 ......................aatttt................... ...................aaaatt...................... 6.99 .......................attttt.................. ..................aaaaat....................... 8.06 ........................ttttta................. .................taaaaa........................ 10.91 .........................ttttaa................ ................ttaaaa......................... 11.87 ..........................tttaat............... ...............attaaa.......................... 4.47 ...........................ttaatt.............. ..............aattaa........................... 2.55 ............................taattt............. .............aaatta............................ 3.60 .............................aattta............ ............taaatt............................. 0.95 ..............................atttat........... ...........ataaat.............................. 2.32 ...............................tttatt.......... ..........aataaa............................... 5.37 ................................ttatta......... .........taataa................................ 5.42 .................................tattat........ ........ataata................................. 2.58 ..................................attata....... .......tataat.................................. 1.26 ...................................ttatat...... ......atataa................................... 3.32 ....................................tatatt..... .....aatata.................................... 1.47 .....................................atattt.... ....aaatat..................................... 4.58 ......................................tatttt... ...aaaata...................................... 6.35 .......................................atttta.. ..taaaat....................................... 5.85 ........................................ttttat. .ataaaa........................................ 5.87 .........................................tttata tataaa......................................... 0.48 tataaaatataataaattaaaaaatttttaatttattatattttata tataaaatataataaattaaaaattttttaatttattatattttata 11.87 best consensus ; assembly # 5 seed: aaataa 41 assembled patterns length 46 ; alignt rev_cpl score gtaaat........................................ ........................................atttac 0.11 .taaata....................................... .......................................tattta. 2.21 ..aaatat...................................... ......................................atattt.. 4.58 ...aatata..................................... .....................................tatatt... 1.47 ....atataa.................................... ....................................ttatat.... 3.32 .....tataaa................................... ...................................tttata..... 0.48 ......ataaat.................................. ..................................atttat...... 2.32 .......taaatt................................. .................................aattta....... 0.95 ........aaatta................................ ................................taattt........ 3.60 .........aattaa............................... ...............................ttaatt......... 2.55 ..........attaaa.............................. ..............................tttaat.......... 4.47 ...........ttaaaa............................. .............................ttttaa........... 11.87 ............taaaaa............................ ............................ttttta............ 10.91 .............aaaaat........................... ...........................attttt............. 8.06 ..............aaaata.......................... ..........................tatttt.............. 6.35 ...............aaataa......................... .........................ttattt............... 3.83 ................aataaa........................ ........................tttatt................ 5.37 .................ataaaa....................... .......................ttttat................. 5.87 ..................taaaat...................... ......................atttta.................. 5.85 ...................aaaatt..................... .....................aatttt................... 6.99 ....................aaattt.................... ....................aaattt.................... 4.75 .....................aatttt................... ...................aaaatt..................... 6.99 ......................attttt.................. ..................aaaaat...................... 8.06 .......................ttttta................. .................taaaaa....................... 10.91 ........................ttttaa................ ................ttaaaa........................ 11.87 .........................tttaat............... ...............attaaa......................... 4.47 ..........................ttaatt.............. ..............aattaa.......................... 2.55 ...........................taattt............. .............aaatta........................... 3.60 ............................aattta............ ............taaatt............................ 0.95 .............................atttat........... ...........ataaat............................. 2.32 ..............................tttatt.......... ..........aataaa.............................. 5.37 ...............................ttatta......... .........taataa............................... 5.42 ................................tattat........ ........ataata................................ 2.58 .................................attata....... .......tataat................................. 1.26 ..................................ttatat...... ......atataa.................................. 3.32 ...................................tatatt..... .....aatata................................... 1.47 ....................................atattt.... ....aaatat.................................... 4.58 .....................................tatttt... ...aaaata..................................... 6.35 ......................................atttta.. ..taaaat...................................... 5.85 .......................................ttttat. .ataaaa....................................... 5.87 ........................................tttata tataaa........................................ 0.48 gtaaatataaattaaaaataaaatttttaatttattatattttata tataaaatataataaattaaaaattttatttttaatttatatttac 11.87 best consensus ; assembly # 6 seed: cacgtc 6 assembled patterns length 11 ; alignt rev_cpl score tgacac..... .....gtgtca 4.67 .gacacg.... ....cgtgtc. 10.39 ..acacgt... ...acgtgt.. 12.79 ...cacgtc.. ..gacgtg... 3.47 ....acgtca. .tgacgt.... 2.04 .....cgtcac gtgacg..... 1.99 tgacacgtcac gtgacgtgtca 12.79 best consensus ; assembly # 7 seed: tattaa 28 assembled patterns length 33 ; alignt rev_cpl score tataaa........................... ...........................tttata 0.48 .ataaaa.......................... ..........................ttttat. 5.87 ..taaaat......................... .........................atttta.. 5.85 ...aaaata........................ ........................tatttt... 6.35 ....aaatat....................... .......................atattt.... 4.58 .....aatata...................... ......................tatatt..... 1.47 ......atataa..................... .....................ttatat...... 3.32 .......tataat.................... ....................attata....... 1.26 ........ataata................... ...................tattat........ 2.58 .........taataa.................. ..................ttatta......... 5.42 ..........aataaa................. .................tttatt.......... 5.37 ...........ataaat................ ................atttat........... 2.32 ............taaatt............... ...............aattta............ 0.95 .............aaatta.............. ..............taattt............. 3.60 ..............aattaa............. .............ttaatt.............. 2.55 ...............attaaa............ ............tttaat............... 4.47 ................ttaaaa........... ...........ttttaa................ 11.87 .................taaaaa.......... ..........ttttta................. 10.91 ..................aaaaat......... .........attttt.................. 8.06 ...................aaaatt........ ........aatttt................... 6.99 ....................aaattt....... .......aaattt.................... 4.75 .....................aatttt...... ......aaaatt..................... 6.99 ......................attttt..... .....aaaaat...................... 8.06 .......................ttttta.... ....taaaaa....................... 10.91 ........................ttttat... ...ataaaa........................ 5.87 .........................tttatt.. ..aataaa......................... 5.37 ..........................ttatta. .taataa.......................... 5.42 ...........................tattaa ttaata........................... 2.02 tataaaatataataaattaaaaatttttattaa ttaataaaaatttttaatttattatattttata 11.87 best consensus ; assembly # 8 seed: cgtgga 6 assembled patterns length 11 ; alignt rev_cpl score tgacac..... .....gtgtca 4.67 .gacacg.... ....cgtgtc. 10.39 ..acacgt... ...acgtgt.. 12.79 ...cacgtg.. ..cacgtg... 13.09 ....acgtgg. .ccacgt.... 10.14 .....cgtgga tccacg..... 1.90 tgacacgtgga tccacgtgtca 13.09 best consensus ; assembly # 9 seed: aattat 30 assembled patterns length 35 ; alignt rev_cpl score aattaa............................. .............................ttaatt 2.55 .attaaa............................ ............................tttaat. 4.47 ..ttaaaa........................... ...........................ttttaa.. 11.87 ...taaaaa.......................... ..........................ttttta... 10.91 ....aaaaat......................... .........................attttt.... 8.06 .....aaaatt........................ ........................aatttt..... 6.99 ......aaatta....................... .......................taattt...... 3.60 .......aattat...................... ......................ataatt....... 1.69 ........attata..................... .....................tataat........ 1.26 .........ttatat.................... ....................atataa......... 3.32 ..........tatatt................... ...................aatata.......... 1.47 ...........atattt.................. ..................aaatat........... 4.58 ............tatttt................. .................aaaata............ 6.35 .............attttt................ ................aaaaat............. 8.06 ..............ttttta............... ...............taaaaa.............. 10.91 ...............ttttaa.............. ..............ttaaaa............... 11.87 ................tttaat............. .............attaaa................ 4.47 .................ttaatt............ ............aattaa................. 2.55 ..................taattt........... ...........aaatta.................. 3.60 ...................aatttt.......... ..........aaaatt................... 6.99 ....................atttta......... .........taaaat.................... 5.85 .....................ttttat........ ........ataaaa..................... 5.87 ......................tttatt....... .......aataaa...................... 5.37 .......................ttatta...... ......taataa....................... 5.42 ........................tattat..... .....ataata........................ 2.58 .........................attatt.... ....aataat......................... 1.12 ..........................ttattt... ...aaataa.......................... 3.83 ...........................tattta.. ..taaata........................... 2.21 ............................atttat. .ataaat............................ 2.32 .............................tttata tataaa............................. 0.48 aattaaaaattatatttttaattttattatttata tataaataataaaattaaaaatataatttttaatt 11.87 best consensus ; assembly # 10 seed: atatta 16 assembled patterns length 21 ; alignt rev_cpl score aattaa............... ...............ttaatt 2.55 .attaaa.............. ..............tttaat. 4.47 ..ttaaaa............. .............ttttaa.. 11.87 ...taaaaa............ ............ttttta... 10.91 ....aaaaat........... ...........attttt.... 8.06 .....aaaatt.......... ..........aatttt..... 6.99 ......aaatta......... .........taattt...... 3.60 .......aattat........ ........ataatt....... 1.69 ........attata....... .......tataat........ 1.26 .........ttatat...... ......atataa......... 3.32 ..........tatatt..... .....aatata.......... 1.47 ...........atatta.... ....taatat........... 1.43 ............tattat... ...ataata............ 2.58 .............attatt.. ..aataat............. 1.12 ..............ttatta. .taataa.............. 5.42 ...............tattaa ttaata............... 2.02 aattaaaaattatattattaa ttaataatataatttttaatt 11.87 best consensus ; assembly # 11 seed: tttaaa 26 assembled patterns length 31 ; alignt rev_cpl score tataaa......................... .........................tttata 0.48 .ataaaa........................ ........................ttttat. 5.87 ..taaaat....................... .......................atttta.. 5.85 ...aaaata...................... ......................tatttt... 6.35 ....aaatat..................... .....................atattt.... 4.58 .....aatata.................... ....................tatatt..... 1.47 ......atataa................... ...................ttatat...... 3.32 .......tataat.................. ..................attata....... 1.26 ........ataata................. .................tattat........ 2.58 .........taataa................ ................ttatta......... 5.42 ..........aataaa............... ...............tttatt.......... 5.37 ...........ataaat.............. ..............atttat........... 2.32 ............taaatt............. .............aattta............ 0.95 .............aaattt............ ............aaattt............. 4.75 ..............aatttt........... ...........aaaatt.............. 6.99 ...............attttt.......... ..........aaaaat............... 8.06 ................ttttta......... .........taaaaa................ 10.91 .................ttttaa........ ........ttaaaa................. 11.87 ..................tttaaa....... .......tttaaa.................. 1.24 ...................ttaaaa...... ......ttttaa................... 11.87 ....................taaaaa..... .....ttttta.................... 10.91 .....................aaaaat.... ....attttt..................... 8.06 ......................aaaatt... ...aatttt...................... 6.99 .......................aaatta.. ..taattt....................... 3.60 ........................aattaa. .ttaatt........................ 2.55 .........................attaaa tttaat......................... 4.47 tataaaatataataaatttttaaaaattaaa tttaatttttaaaaatttattatattttata 11.87 best consensus ; assembly # 12 seed: cgtgta 6 assembled patterns length 11 ; alignt rev_cpl score tgacac..... .....gtgtca 4.67 .gacacg.... ....cgtgtc. 10.39 ..acacgt... ...acgtgt.. 12.79 ...cacgtg.. ..cacgtg... 13.09 ....acgtgt. .acacgt.... 12.79 .....cgtgta tacacg..... 0.94 tgacacgtgta tacacgtgtca 13.09 best consensus ; assembly # 13 seed: acgtgc 5 assembled patterns length 10 ; alignt rev_cpl score tgacac.... ....gtgtca 4.67 .gacacg... ...cgtgtc. 10.39 ..acacgt.. ..acgtgt.. 12.79 ...cacgtg. .cacgtg... 13.09 ....acgtgc gcacgt.... 0.86 tgacacgtgc gcacgtgtca 13.09 best consensus ; assembly # 14 seed: accgcc 1 assembled patterns length 6 ;alignt rev_cpl score accgcc ggcggt 0.69 accgcc ggcggt 0.69 best consensus ; assembly # 15 seed: cgacac 7 assembled patterns length 12 ; alignt rev_cpl score cgacac...... ......gtgtcg 0.56 .gacacg..... .....cgtgtc. 10.39 ..acacgt.... ....acgtgt.. 12.79 ...cacgtg... ...cacgtg... 13.09 ....acgtgt.. ..acacgt.... 12.79 .....cgtgtc. .gacacg..... 10.39 ......gtgtca tgacac...... 4.67 cgacacgtgtca tgacacgtgtcg 13.09 best consensus ; assembly # 16 seed: cacgta 4 assembled patterns length 9 ; alignt rev_cpl score tgacac... ...gtgtca 4.67 .gacacg.. ..cgtgtc. 10.39 ..acacgt. .acgtgt.. 12.79 ...cacgta tacgtg... 0.43 tgacacgta tacgtgtca 12.79 best consensus ; assembly # 17 seed: aaaaac 9 assembled patterns length 14 ; alignt rev_cpl score aaaaaa........ ........tttttt 6.32 .aaaaat....... .......attttt. 8.06 ..aaaatt...... ......aatttt.. 6.99 ...aaatta..... .....taattt... 3.60 ....aattaa.... ....ttaatt.... 2.55 .....attaaa... ...tttaat..... 4.47 ......ttaaaa.. ..ttttaa...... 11.87 .......taaaaa. .ttttta....... 10.91 ........aaaaac gttttt........ 0.41 aaaaaattaaaaac gtttttaatttttt 11.87 best consensus ; assembly # 18 seed: aatatt 39 assembled patterns length 44 ; alignt rev_cpl score ttaata...................................... ......................................tattaa 2.02 .taatat..................................... .....................................atatta. 1.43 ..aatata.................................... ....................................tatatt.. 1.47 ...atataa................................... ...................................ttatat... 3.32 ....tataat.................................. ..................................attata.... 1.26 .....ataata................................. .................................tattat..... 2.58 ......taataa................................ ................................ttatta...... 5.42 .......aataaa............................... ...............................tttatt....... 5.37 ........ataaaa.............................. ..............................ttttat........ 5.87 .........taaaat............................. .............................atttta......... 5.85 ..........aaaatt............................ ............................aatttt.......... 6.99 ...........aaatta........................... ...........................taattt........... 3.60 ............aattaa.......................... ..........................ttaatt............ 2.55 .............attaaa......................... .........................tttaat............. 4.47 ..............ttaaaa........................ ........................ttttaa.............. 11.87 ...............taaaaa....................... .......................ttttta............... 10.91 ................aaaaat...................... ......................attttt................ 8.06 .................aaaata..................... .....................tatttt................. 6.35 ..................aaatat.................... ....................atattt.................. 4.58 ...................aatatt................... ...................aatatt................... 0.37 ....................atattt.................. ..................aaatat.................... 4.58 .....................tatttt................. .................aaaata..................... 6.35 ......................attttt................ ................aaaaat...................... 8.06 .......................ttttta............... ...............taaaaa....................... 10.91 ........................ttttaa.............. ..............ttaaaa........................ 11.87 .........................tttaat............. .............attaaa......................... 4.47 ..........................ttaatt............ ............aattaa.......................... 2.55 ...........................taattt........... ...........aaatta........................... 3.60 ............................aatttt.......... ..........aaaatt............................ 6.99 .............................atttta......... .........taaaat............................. 5.85 ..............................ttttat........ ........ataaaa.............................. 5.87 ...............................tttatt....... .......aataaa............................... 5.37 ................................ttatta...... ......taataa................................ 5.42 .................................tattat..... .....ataata................................. 2.58 ..................................attata.... ....tataat.................................. 1.26 ...................................ttatat... ...atataa................................... 3.32 ....................................tatatt.. ..aatata.................................... 1.47 .....................................atatta. .taatat..................................... 1.43 ......................................tattaa ttaata...................................... 2.02 ttaatataataaaattaaaaatatttttaattttattatattaa ttaatataataaaattaaaaatatttttaattttattatattaa 11.87 best consensus ; assembly # 19 seed: cgcgcc 1 assembled patterns length 6 ;alignt rev_cpl score cgcgcc ggcgcg 0.08 cgcgcc ggcgcg 0.08 best consensus ; assembly # 20 seed: agcgtc 1 assembled patterns length 6 ;alignt rev_cpl score agcgtc gacgct 0.07 agcgtc gacgct 0.07 best consensus ; Host name rsat ; Job started 2026-06-05.094210 ; Job done 2026-06-05.094222 ; Seconds 11.68 ; user 11.68 ; system 0.02 ; cuser 0 ; csystem 0