peak-motifs RIBC_ASM

Motif discovery

Motif 1 oligos_6-8nt_m1

k-mer sig=16.57; evalue=2.7e-17

rmCAAAAAaAtrh

DYATTTTTTTGKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3 (17.65%)
Max nb of predicted sites per peak: 2
(107796682|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796682)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6-8nt_m2

k-mer sig=4.25; evalue=5.6e-05

trcAGGGGSakm

KMTSCCCCTGYA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 2
(T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6-8nt_m3

k-mer sig=16.57; evalue=2.7e-17

ahTaAAaAaATta

TAATTTTTTTADT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 3
(T459_20168|Capsicum_annuum.ASM51225v2.60|T459_20168)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6-8nt_m4

k-mer sig=16.57; evalue=2.7e-17

ysCAaAAAAAaksr

YSMTTTTTTTTGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3 (17.65%)
Max nb of predicted sites per peak: 2
(AUR62007757.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62007757.v1.0)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6-8nt_m5

k-mer sig=3.92; evalue=0.00012

gwwCATGCCwyky

RMRWGGCATGWWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 4
(gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892)
Mean nb of predicted sites per peak: 2.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6-8nt_m6

k-mer sig=3.29; evalue=0.00051

ygCAGGGGCwr

YWGCCCCTGCR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 2
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6-8nt_m7

k-mer sig=1.41; evalue=0.039

mmCCTCCAyy

RRTGGAGGKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 3
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6-8nt_m8

k-mer sig=3.92; evalue=0.00012

GmAaCATGCCaywb

VWRTGGCATGTTKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 5
(107796682|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796682)
Mean nb of predicted sites per peak: 2.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6-8nt_m9

k-mer sig=16.57; evalue=2.7e-17

ssCAAAAaAACcm

KGGTTTTTTTGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (29.41%)
Max nb of predicted sites per peak: 3
(AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0)
Mean nb of predicted sites per peak: 1.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6-8nt_m10

k-mer sig=16.57; evalue=2.7e-17

mrCAAaAaAAGtm

KACTTTTTTTGYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 2
(gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_test_vs_ctrl_m1

k-mer sig=3.53; evalue=0.0003

vcCCaCCmssbsssmcyssCCCss

SSGGGSSRGKSSSVSSKGGTGGGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 3
(gene3683|Medicago_truncatula.MtrunA17r50ANR.60|gene3683)
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_test_vs_ctrl_m2

k-mer sig=3.48; evalue=0.00033

sGGCrkssGsGskSsyGCCsk

MSGGCRSSMSCSCSSMYGCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 7
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 1.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m3

k-mer sig=3.48; evalue=0.00033

kvattsskSkbgRsGGGms

SKCCCSYCVMSMSSAATBM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 4
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 1.78

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m4

k-mer sig=3.53; evalue=0.0003

ssCsbSSgSsksssscsssbSsyCSskk

MMSSGRSSVSSSGSSSSMSSCSSVSGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 13
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 4.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m5

k-mer sig=3.53; evalue=0.0003

rvCCasSGssGskssvsGSssswCCkk

MMGGWSSSSCSBSSMSCSSCSSTGGBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 3
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 1.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m6

k-mer sig=3.53; evalue=0.0003

gsSbCSGsssSsbSsCsGssSSysssssb

VSSSSSRSSSSCSGSSVSSSSSCSGVSSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 13
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 7.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_test_vs_ctrl_m7

k-mer sig=3.48; evalue=0.00033

ysCtCsbSsSSsbsGcsSsskr

YMSSSSGCSVSSSSSVSGAGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 5
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_test_vs_ctrl_m8

k-mer sig=3.53; evalue=0.0003

ssGGGmgkSssgSssgsgGsSSssSGgsgs

SCSCCSSSSSSCCSCSSSCSSSMCKCCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 17
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 6.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 dyads_test_vs_ctrl_m9

k-mer sig=3.53; evalue=0.0003

ssGsabsGSsGrksgggsSsSbkGsbk

MVSCMVSSSSCCCSMYCSSCSVTSCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 9
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 3.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: RIBC_ASM_UP2 (05/06/2026 11:25)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results