peak-motifs CD4_VitD3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=29.54; evalue=2.9e-30

wwtaataaAAAAtaattTTttaww

WWTAAAAAATTATTTTTTATTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

ZNF35_1 ZNF35_1 D 15 0.6250 0.740 0.462 NA NA

HOXD10_1 HOXD10_1 D 15 0.5769 0.713 0.411 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

No match

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2889 (13.91%)
Max nb of predicted sites per peak: 204
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 3.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=29.54; evalue=2.9e-30

maaaAmAAAAAAaAAAAArAaaaa

TTTTTYTTTTTTTTTTTTKTTTTK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

HDAC2_disc6 HDAC2_disc6 D 15 0.6250 0.799 0.500 NA NA

ZNF35_1 ZNF35_1 D 15 0.6250 0.753 0.470 NA NA

FOXC1_3 FOXC1_3 D 13 0.5417 0.739 0.400 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

ZN362.H12CORE.0.P.C M11228 D 23 0.9583 0.948 0.908 NA NA

ZN613.H12CORE.0.P.C M11317 R 24 0.9600 0.821 0.788 NA NA

CPEB1.H12CORE.1.S.B M10096 R 18 0.7500 0.781 0.586 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4335 (20.87%)
Max nb of predicted sites per peak: 77
(chr4:39360003-39360662)
Mean nb of predicted sites per peak: 9.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=29.54; evalue=2.9e-30

wawAtAwAwAwwtAtAtAtrtata

TATAYATATATAWWTWTWTATWTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

TATA_known6 TATA_known6 R 16 0.6667 0.788 0.526 NA NA

FOXC1_3 FOXC1_3 D 13 0.5417 0.764 0.414 NA NA

FOXJ2_1 FOXJ2_1 D 15 0.5556 0.736 0.409 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

FOXR2.H12CORE.0.M.C M10259 D 17 0.7083 0.722 0.512 NA NA

FOXC1.H12CORE.1.S.C M10231 R 14 0.5833 0.705 0.411 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3104 (14.94%)
Max nb of predicted sites per peak: 342
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 6.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=29.54; evalue=2.9e-30

wwtttTTtaAAAAAtaaaattaww

WWTAATTTTATTTTTTAAAAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

No match

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

ZN362.H12CORE.0.P.C M11228 D 17 0.5667 0.710 0.402 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3325 (16.01%)
Max nb of predicted sites per peak: 135
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 2.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=29.54; evalue=2.9e-30

awawaaatAaaAaAtAtataawww

WWWTTATATATTTTTTATTTWTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

TATA_known6 TATA_known6 R 16 0.6667 0.713 0.475 NA NA

ZNF35_1 ZNF35_1 D 15 0.6250 0.721 0.451 NA NA

FOXC1_3 FOXC1_3 D 13 0.5417 0.817 0.442 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

ZN362.H12CORE.0.P.C M11228 D 23 0.9583 0.722 0.692 NA NA

CPEB1.H12CORE.1.S.B M10096 R 15 0.5556 0.754 0.419 NA NA

FOXL1.H12CORE.0.S.B M10249 R 16 0.5714 0.702 0.401 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4800 (23.11%)
Max nb of predicted sites per peak: 289
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 5.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=22.27; evalue=5.4e-23

wattAAAAAaAtAaAaatttttww

WWAAAAATTTTTATTTTTTTAATW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

ZNF35_1 ZNF35_1 D 15 0.6250 0.706 0.442 NA NA

FOXC1_3 FOXC1_3 D 13 0.5417 0.778 0.421 NA NA

FOXL1_5 FOXL1_5 D 13 0.5417 0.765 0.414 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

CPEB1.H12CORE.1.S.B M10096 R 18 0.7500 0.783 0.587 NA NA

ZN362.H12CORE.0.P.C M11228 D 21 0.8077 0.720 0.582 NA NA

ZN384.H12CORE.0.PSM.A M11232 D 17 0.7083 0.712 0.504 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

FOXD3 MA0041.3 D 14 0.5833 0.704 0.411 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6001 (28.89%)
Max nb of predicted sites per peak: 171
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 4.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=9.63; evalue=2.3e-10

taTrTrTATATATAyAyAta

TATRTRTATATATAYAYATA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

TATA_known6 TATA_known6 D 16 0.8000 0.745 0.596 NA NA

FOXB1_3 FOXB1_3 D 11 0.5500 0.740 0.407 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.800 0.680 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

FOXB1 MA0845.1 D 11 0.5500 0.740 0.407 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1053 (5.07%)
Max nb of predicted sites per peak: 296
(chr3:33757531-33757928)
Mean nb of predicted sites per peak: 13.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=9.63; evalue=2.3e-10

atatAyATATATATrTatat

ATATAYATATATATRTATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

TATA_known6 TATA_known6 R 16 0.8000 0.738 0.590 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.805 0.684 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1342 (6.46%)
Max nb of predicted sites per peak: 296
(chr3:33757531-33757928)
Mean nb of predicted sites per peak: 12.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=22.27; evalue=5.4e-23

wmwamAAAAAAAaAAAAAAaaaaa

TTTTTTTTTTTTTTTTTTTKTWKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

HDAC2_disc6 HDAC2_disc6 D 15 0.6250 0.791 0.495 NA NA

ZNF35_1 ZNF35_1 D 15 0.6250 0.733 0.458 NA NA

FOXC1_3 FOXC1_3 D 13 0.5417 0.742 0.402 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

ZN362.H12CORE.0.P.C M11228 D 23 0.9583 0.936 0.897 NA NA

ZN613.H12CORE.0.P.C M11317 R 24 0.9600 0.809 0.776 NA NA

CPEB1.H12CORE.1.S.B M10096 R 18 0.7500 0.774 0.581 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4736 (22.80%)
Max nb of predicted sites per peak: 79
(chr4:39360003-39360662)
Mean nb of predicted sites per peak: 8.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=22.27; evalue=5.4e-23

wwatwaaAaaaattatAtAtayaw

WTRTATATATAATTTTTTTWATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

TATA_known6 TATA_known6 R 15 0.6000 0.808 0.485 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0

No match

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0

No match

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4115 (19.81%)
Max nb of predicted sites per peak: 332
(chr2:7593375-7594131)
Mean nb of predicted sites per peak: 4.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus ENCODE database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus Hocomoco database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus Homer database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: CD4_VitD3_K27AcLoss (05/06/2026 16:49)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtaataaAAAAtaattTTttaww ZNF35_1 ZNF35_1 D 15 0.6250 0.740 0.462 NA NA HOXD10_1 HOXD10_1 D 15 0.5769 0.713 0.411 NA NA Total matches= 2

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtaataaAAAAtaattTTttaww Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtaataaAAAAtaattTTttaww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtaataaAAAAtaattTTttaww Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa Total matches= 0

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata FOXR2.H12CORE.0.M.C M10259 D 17 0.7083 0.722 0.512 NA NA FOXC1.H12CORE.1.S.C M10231 R 14 0.5833 0.705 0.411 NA NA Total matches= 2

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata Total matches= 0

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww Total matches= 0

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww ZN362.H12CORE.0.P.C M11228 D 17 0.5667 0.710 0.402 NA NA Total matches= 1

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor awawaaatAaaAaAtAtataawww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor awawaaatAaaAaAtAtataawww Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wattAAAAAaAtAaAaatttttww Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wattAAAAAaAtAaAaatttttww FOXD3 MA0041.3 D 14 0.5833 0.704 0.411 NA NA Total matches= 1

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor taTrTrTATATATAyAyAta TATA_known6 TATA_known6 D 16 0.8000 0.745 0.596 NA NA FOXB1_3 FOXB1_3 D 11 0.5500 0.740 0.407 NA NA Total matches= 2

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor taTrTrTATATATAyAyAta FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.800 0.680 NA NA Total matches= 1

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor taTrTrTATATATAyAyAta Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor taTrTrTATATATAyAyAta FOXB1 MA0845.1 D 11 0.5500 0.740 0.407 NA NA Total matches= 1

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atatAyATATATATrTatat TATA_known6 TATA_known6 R 16 0.8000 0.738 0.590 NA NA Total matches= 1

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atatAyATATATATrTatat FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.805 0.684 NA NA Total matches= 1

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atatAyATATATATrTatat Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atatAyATATATATrTatat Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa Total matches= 0

ENCODE name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwatwaaAaaaattatAtAtayaw TATA_known6 TATA_known6 R 15 0.6000 0.808 0.485 NA NA Total matches= 1

Hocomoco name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwatwaaAaaaattatAtAtayaw Total matches= 0

Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwatwaaAaaaattatAtAtayaw Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wwatwaaAaaaattatAtAtayaw Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

ZNF35_1 ZNF35_1 D 15 0.6250 0.740 0.462 NA NA

HOXD10_1 HOXD10_1 D 15 0.5769 0.713 0.411 NA NA

Total matches= 2

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaataaAAAAtaattTTttaww

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maaaAmAAAAAAaAAAAArAaaaa

Total matches= 0

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

FOXR2.H12CORE.0.M.C M10259 D 17 0.7083 0.722 0.512 NA NA

FOXC1.H12CORE.1.S.C M10231 R 14 0.5833 0.705 0.411 NA NA

Total matches= 2

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wawAtAwAwAwwtAtAtAtrtata

Total matches= 0

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

ZN362.H12CORE.0.P.C M11228 D 17 0.5667 0.710 0.402 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtttTTtaAAAAAtaaaattaww

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awawaaatAaaAaAtAtataawww

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wattAAAAAaAtAaAaatttttww

FOXD3 MA0041.3 D 14 0.5833 0.704 0.411 NA NA

Total matches= 1

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

TATA_known6 TATA_known6 D 16 0.8000 0.745 0.596 NA NA

FOXB1_3 FOXB1_3 D 11 0.5500 0.740 0.407 NA NA

Total matches= 2

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.800 0.680 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor taTrTrTATATATAyAyAta

FOXB1 MA0845.1 D 11 0.5500 0.740 0.407 NA NA

Total matches= 1

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

TATA_known6 TATA_known6 R 16 0.8000 0.738 0.590 NA NA

Total matches= 1

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

FOXR2.H12CORE.0.M.C M10259 R 17 0.8500 0.805 0.684 NA NA

Total matches= 1

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atatAyATATATATrTatat

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmwamAAAAAAAaAAAAAAaaaaa

Total matches= 0

ENCODE

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

TATA_known6 TATA_known6 R 15 0.6000 0.808 0.485 NA NA

Total matches= 1

Hocomoco

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0

Homer

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwatwaaAaaaattatAtAtayaw

Total matches= 0