RSAT - peak-motifs result

Analysis: ChIP-seq_motifs_BASP1_rep2 (05/06/2026 14:33)

peak-motifs  -v 1 -title ChIP-seq_motifs_BASP1_rep2 -i $RSAT/public_html/tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: aatcgaatggaatcg (sig=10.18; e-value=6.6e-11) RC: cgattccattcgatt oligos_6nt_mkv1_m2 assembly: catcacct (sig=5.21; e-value=6.2e-06) RC: aggtgatg oligos_6nt_mkv1_m3 assembly: tggaatcgaatggaaacact (sig=10.18; e-value=6.6e-11) RC: agtgtttccattcgattcca oligos_6nt_mkv1_m4 assembly: aactgctctgt (sig=4.46; e-value=3.5e-05) RC: acagagcagtt oligos_6nt_mkv1_m5 assembly: ctagaca (sig=3.44; e-value=0.00036) RC: tgtctag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: ggaatcgaatggaatcatcg (sig=17.19; e-value=6.5e-18) RC: cgatgattccattcgattcc oligos_7nt_mkv1_m2 assembly: tttgaaacactctt (sig=8.91; e-value=1.2e-09) RC: aagagtgtttcaaa oligos_7nt_mkv1_m3 assembly: cacagagcagttt (sig=8.72; e-value=1.9e-09) RC: aaactgctctgtg oligos_7nt_mkv1_m4 assembly: cctagacag (sig=7.83; e-value=1.5e-08) RC: ctgtctagg oligos_7nt_mkv1_m5 assembly: gattctatt (sig=5.87; e-value=1.3e-06) RC: aatagaatc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=10.18; evalue=6.6e-11 rkmATSGAATGGAATCrwm KWYGATTCCATTCSATKMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (10.87%) Max nb of predicted sites per peak: 21  (chr1:143232977-143233178(.)) Mean nb of predicted sites per peak: 13.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=5.21; evalue=6.2e-06 yaSATCACCtrG CYAGGTGATSTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (19.57%) Max nb of predicted sites per peak: 6  (chr18:110296-110497(.)) Mean nb of predicted sites per peak: 3.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=10.18; evalue=6.6e-11 AATGGAmTCGAATGGAATCATCrw WYGATGATTCCATTCGAKTCCATT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (8.70%) Max nb of predicted sites per peak: 8  (chr1:143232977-143233178(.)) Mean nb of predicted sites per peak: 7.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=4.46; evalue=3.5e-05 aaAaCTGCTCTrTsa TSAYAGAGCAGTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (54.35%) Max nb of predicted sites per peak: 3  (chr22:14373296-14373497(.)) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=3.44; evalue=0.00036 rmCTAGACARr YYTGTCTAGKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 32 (69.57%) Max nb of predicted sites per peak: 3  (chrUn_GL000216v2:149532-149733(.)) Mean nb of predicted sites per peak: 1.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=17.19; evalue=6.5e-18 AtGGAmTCGAATGGAATCAtCrwm KWYGATGATTCCATTCGAKTCCAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (13.04%) Max nb of predicted sites per peak: 10  (chr1:125180087-125180288(.)) Mean nb of predicted sites per peak: 5.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=8.91; evalue=1.2e-09 GtTttGAAACACtCTTTy RAAAGAGTGTTTCAAAAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (63.04%) Max nb of predicted sites per peak: 2  (chrUn_KI270538v1:88692-88893(.)) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=8.72; evalue=1.9e-09 wtSAYAGAGCAGtTTyk MRAAACTGCTCTRTSAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (56.52%) Max nb of predicted sites per peak: 3  (chr22:14373296-14373497(.)) Mean nb of predicted sites per peak: 1.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=7.83; evalue=1.5e-08 ArmCTAGACARrA TYYTGTCTAGKYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 31 (67.39%) Max nb of predicted sites per peak: 3  (chrUn_GL000216v2:149532-149733(.)) Mean nb of predicted sites per peak: 1.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=5.87; evalue=1.3e-06 hhGATTCyAywcg CGWRTRGAATCDD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (32.61%) Max nb of predicted sites per peak: 9  (chr16:46394684-46394885(.)) Mean nb of predicted sites per peak: 3.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ChIP-seq_motifs_BASP1_rep2 -i $RSAT/public_html/tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc

Warning: Not a single pattern was found in file tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/06/05/peak-motifs.2026-06-05.143245_2026-06-05.143245_lkXZEc/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab