peak-motifs test

Motif discovery

Motif 1 oligos_6-8nt_m1

k-mer sig=16.67; evalue=2.1e-17

rmCAAAaAaAtrw

WYATTTTTTTGKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 2
(LOC107796682|Nicotiana_tabacum.TN90.GCF_000715135.1.NCBI|LOC107796682)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6-8nt_m2

k-mer sig=5.01; evalue=9.8e-06

akGcaACATGCMatdk

MHATKGCATGTTGCMT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 5
(LOC107796682|Nicotiana_tabacum.TN90.GCF_000715135.1.NCBI|LOC107796682)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6-8nt_m3

k-mer sig=4.35; evalue=4.5e-05

trcAGGGGGakm

KMTCCCCCTGYA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 2
(T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6-8nt_m4

k-mer sig=16.67; evalue=2.1e-17

ysCAaAAAAAaksr

YSMTTTTTTTTGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3 (17.65%)
Max nb of predicted sites per peak: 2
(AUR62007757.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62007757.v1.0)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6-8nt_m5

k-mer sig=16.67; evalue=2.1e-17

ahTAAAaAaATtr

YAATTTTTTTADT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 3
(T459_20168|Capsicum_annuum.ASM51225v2.60|T459_20168)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6-8nt_m6

k-mer sig=3.35; evalue=0.00045

ygCAGGGGCwr

YWGCCCCTGCR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 2
(LOC107796682|Nicotiana_tabacum.TN90.GCF_000715135.1.NCBI|LOC107796682)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6-8nt_m7

k-mer sig=1.54; evalue=0.029

mmCCTCCAyy

RRTGGAGGKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 3
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6-8nt_m8

k-mer sig=5.01; evalue=9.8e-06

rartGGCATGwys

SRWCATGCCAYTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 4
(gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6-8nt_m9

k-mer sig=16.67; evalue=2.1e-17

ssCAAAAaAACcm

KGGTTTTTTTGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 3
(AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6-8nt_m10

k-mer sig=16.67; evalue=2.1e-17

mrCAAaAaAAGtm

KACTTTTTTTGYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 2
(gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_test_vs_ctrl_m1

k-mer sig=4.14; evalue=7.2e-05

mraCATGCCayt

ARTGGCATGTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 6
(LOC107796682|Nicotiana_tabacum.TN90.GCF_000715135.1.NCBI|LOC107796682)
Mean nb of predicted sites per peak: 3.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_test_vs_ctrl_m2

k-mer sig=4.14; evalue=7.2e-05

mvCCaCCmccssssccmssCCCvm

KBGGGSSKGGSSSSGGKGGTGGBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 6
(HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991)
Mean nb of predicted sites per peak: 2.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m3

k-mer sig=4.14; evalue=7.2e-05

svrGatTSssRbbgGgGGGmg

CKCCCCCCVVYSSSAATCYBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 5
(AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0)
Mean nb of predicted sites per peak: 1.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m4

k-mer sig=4.14; evalue=7.2e-05

vGGCrkSsSbGSkGssGSCkk

MMGSCSSCMSCVSSSMYGCCB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 5
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m5

k-mer sig=4.14; evalue=7.2e-05

rvCCabsSscGstssmsGSsscaCCks

SMGGTGSSSCSKSSASCGSSSVTGGBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 5
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 2.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m6

k-mer sig=4.14; evalue=7.2e-05

rsCrasGGssGkrSsvsGvbstcCtw

WAGGASVBCSBSSYMCSSCCSTYGSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_test_vs_ctrl_m7

k-mer sig=4.14; evalue=7.2e-05

gsCbCsGGsbSsbSsssGksssySssssb

VSSSSSRSSSMCSSSSVSSVSCCSGVGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 12
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 6.75

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_test_vs_ctrl_m8

k-mer sig=4.14; evalue=7.2e-05

ssccbssgsbsgssssbrgbSsyCSskb

VMSSGRSSVCYVSSSSCSVSCSSVGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (35.29%)
Max nb of predicted sites per peak: 12
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 4.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 dyads_test_vs_ctrl_m9

k-mer sig=4.14; evalue=7.2e-05

wsCtCsbSsbSSysSmsscska

TMSGSSKSSRSSVSSVSGAGSW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 3
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 1.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 dyads_test_vs_ctrl_m10

k-mer sig=4.14; evalue=7.2e-05

svSGScrsSssSSgsGsgGsSSccSGsbks

SMVSCSGGSSSCCSCSCSSSSSSYGSCSBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 12
(gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259)
Mean nb of predicted sites per peak: 4.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: test (05/06/2026 14:53)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results