; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.103114_XBOybz.pat -i $RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.103114_agxRfP.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 1
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.103114_agxRfP.fasta
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.103114_XBOybz.pat
; Search method        	IUPAC
; Threshold            	0
; Allowed substitutions	1
; Return fields
;                     	sites
;                     	limits
; Patterns
; 	seq	id	score
; 	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	CP000830.1	-3789584	-1	-	0.00
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	D	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-3314183	-3314154	AAAACCTGAGTGAATTTATCAGGATTAAGG	0.97
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	D	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-3224039	-3224010	TAATCCTGACAGAACTTATCGGGAATTGCA	0.97
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	D	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-2738422	-2738393	TAAATATGATTAAAACACTCGGGAATTATT	1.00
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	D	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-2371493	-2371464	ATAACATGAAAGTCTTACCCGCATCTTAAT	0.97
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	D	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-2169185	-2169156	AAATCCTGATTATTTTTGTCGGGTATAGCA	0.97
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	R	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-3749886	-3749857	ATAATGCGACGAGAGAAGTCAGAAGAAGTT	0.97
WWAANNTGANNNNNNNWNTCRNNWNWWNNW	R	WWAANNTGANNNNNNNWNTCRNNWNWWNNW	CP000830.1	-3314186	-3314157	TAATCCTGATAAATTCACTCAGGTTTTGTT	0.97
; Host name	rsat
; Job started	2026-06-08.103114
; Job done	2026-06-08.103130
; Seconds	15.89
;	user	15.89
;	system	0
;	cuser	0
;	csystem	0