; dna-pattern -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.105709_Yryuis.pat -i $RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.105709_Fmi4dA.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 1
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file $RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.105709_Fmi4dA.fasta
; Input format fasta
; Pattern file $RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.105709_Yryuis.pat
; Search method IUPAC
; Threshold 0
; Allowed substitutions 1
; Return fields
; sites
; limits
; Patterns
; seq id score
; TAAWYnnnnnnnnnnnnnnnnGGAATT TAAWYnnnnnnnnnnnnnnnnGGAATT 1
;
; Matching positions
; PatID Strand Pattern SeqID Start End matching_seq Score
START_END DR - CP000830.1 -3789584 -1 - 0.00
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3287854 -3287828 TAATCGGACTGCTCGACCTGCGGAATA 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3224039 -3224013 TAATCCTGACAGAACTTATCGGGAATT 1.00
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3205416 -3205390 TGATCCGGTTCTCTTCGGCCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3140959 -3140933 TGAATACGCCCACAATTTCCTGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3090530 -3090504 TATACCCCCCCGTGGGTGCGGGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3032909 -3032883 TCAATTTCATCATCTTCTGCCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2984277 -2984251 CAATTCGCAGCTCTCGGTCCCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2738422 -2738396 TAAATATGATTAAAACACTCGGGAATT 1.00
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2609758 -2609732 TGAACTTGCGCGGCAGGAACTGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2517328 -2517302 CAAATGTCGCGTCCGGTCGTCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2263411 -2263385 GAAACTCGCCACCACGGCAGAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2181963 -2181937 CAATCTCGACGAGATCCGGATGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2075458 -2075432 TCATCGCGCGGAATTTTGCCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2021816 -2021790 CAATCTCGTTCTCGTGGTGCGGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1952790 -1952764 GAATTCCATCAGCATCTGGTTGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1887533 -1887507 TAAACTTCCTCATACCACTCGTGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1665122 -1665096 TATATCGCGGCGGGGTTCGCGGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1638980 -1638954 AAATCGCGTCGGTCGAGCGCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1498252 -1498226 TACTCTGTGCAAAACAGGTAAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1449309 -1449283 TGATCCGCTAGCCAAAGGGACGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1260055 -1260029 TAAACCGAACTAGCGCGAATAGCAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1181417 -1181391 GAAATCGTCCTTGTGGACCATGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1012195 -1012169 TCATCAGGATGCCGGGGATGAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -770337 -770311 TAAACTGATAGATCGTGTCTTCGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -560586 -560560 TCATTGCCGCGTCGAGGATCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT D TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -208340 -208314 TGATCGCCGGGTGGGTGTAGAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3392063 -3392037 TAAACTCTCGGCAAACCCGCCGAAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -3028044 -3028018 GAATTCGATCACGACGATGCTGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2627491 -2627465 GAAATAGCCCGGACGCCTGACGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2495527 -2495501 GAATTACTGGGGCTGGCCTGCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2302485 -2302459 TATACGGGCCATGTTGCCATCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2201604 -2201578 GAAATCCACCGTCGCCAGTTCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -2010677 -2010651 TATACCCATACGGAATAATCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1952789 -1952763 GAATTCCAACCAGATGCTGATGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1868183 -1868157 TGAACACGTCGCCCGCCAGCAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1586167 -1586141 TAAATCAATTCTTCTCGAATCGGAAAT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1358055 -1358029 GAAACCGCTGGGCCTGCAACCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -910961 -910935 TAAATGATTCGTGTCGAGAGAGGAATT 1.00
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -876383 -876357 AAATCGTCCCTGTCGGCGGACGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -745587 -745561 TGATTCCTCGGCCATTGGCAAGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -127096 -127070 GAAACCACGCGCCCAGAGCGCGGAATT 0.96
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -37692 -37666 TAAATCCATGGCCGGGCTCTGGGAATT 1.00
TAAWYnnnnnnnnnnnnnnnnGGAATT R TAAWYnnnnnnnnnnnnnnnnGGAATT CP000830.1 -1063 -1037 TAATTTCCTTGCGGGATGAGCGGATTT 0.96
; Host name rsat
; Job started 2026-06-08.105709
; Job done 2026-06-08.105721
; Seconds 11.84
; user 11.84
; system 0.01
; cuser 0
; csystem 0