; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.150545_9ReRqT.pat -i $RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.150545_zZ5pWe -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.150545_zZ5pWe
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.150545_9ReRqT.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	sites
;                     	limits
; Patterns
; 	seq	id	score
; 	AAMAATCT	NBS	1
; 	WRATATCT	EE	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	LOC_Os10g11860	-7368	-1	-	0.00
NBS	R	AAMAATCT	LOC_Os10g11860	-6573	-6566	ttgcAACAATCTgtat	1.00
EE	R	WRATATCT	LOC_Os10g11860	-6286	-6279	taaaAAATATCTccca	1.00
EE	R	WRATATCT	LOC_Os10g11860	-2610	-2603	taagTAATATCTtaaa	1.00
; Host name	rsat
; Job started	2026-06-08.150546
; Job done	2026-06-08.150546
; Seconds	0.08
;	user	0.08
;	system	0.02
;	cuser	0
;	csystem	0