; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.151806_OTFCuk.pat -i $RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.151806_iukMqE -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/06/08/tmp_sequence_2026-06-08.151806_iukMqE
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/06/08/dna-pattern_2026-06-08.151806_OTFCuk.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	sites
;                     	limits
; Patterns
; 	seq	id	score
; 	AAMAATCT	NBS	1
; 	WRATATCT	EE	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	LOC_Os04g30490	-6931	-1	-	0.00
EE	D	WRATATCT	LOC_Os04g30490	-6320	-6313	ctgaAAATATCTagca	1.00
EE	D	WRATATCT	LOC_Os04g30490	-3383	-3376	ctcgAGATATCTaaac	1.00
EE	D	WRATATCT	LOC_Os04g30490	-3187	-3180	ggcaTGATATCTtgag	1.00
EE	R	WRATATCT	LOC_Os04g30490	-3383	-3376	gtttAGATATCTcgag	1.00
EE	R	WRATATCT	LOC_Os04g30490	-3343	-3336	aattTGATATCTtcag	1.00
EE	R	WRATATCT	LOC_Os04g30490	-2067	-2060	aaccTGATATCTcctg	1.00
; Host name	rsat
; Job started	2026-06-08.151806
; Job done	2026-06-08.151806
; Seconds	0.09
;	user	0.09
;	system	0.02
;	cuser	0
;	csystem	0