peak-motifs p300_heart_versus_limb

Sequence composition (test sequences)

Nb of peaks: 17
Total seq. size: 3 kb
Min length: 201 bp
Mean length: 201 bp
Max length: 201 bp [ view peaks in genome browser : ]
[ coordinates: UCSC BED track ]
[ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 34262
Total seq. size: 6887 kb
Min length: 76 bp
Mean length: 200.996 bp
Max length: 201 bp [ view peaks in genome browser : ]
[ coordinates: UCSC BED track ]
[ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

motif discovery

oligos_6nt_test_vs_ctrl

oligos_6nt_test_vs_ctrl_m1	assembly: tgagtgca (sig=1.64; e-value=0.023)	RC: tgcactca
oligos_6nt_test_vs_ctrl_m2	assembly: gtccta (sig=0.88; e-value=0.13)	RC: taggac
oligos_6nt_test_vs_ctrl_m3	assembly: gggtga (sig=0.32; e-value=0.48)	RC: tcaccc
oligos_6nt_test_vs_ctrl_m4	assembly: attcac (sig=0.17; e-value=0.68)	RC: gtgaat
oligos_6nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_test_vs_ctrl

oligos_7nt_test_vs_ctrl_m1	assembly: agtgcagg (sig=1.61; e-value=0.025)	RC: cctgcact
oligos_7nt_test_vs_ctrl_m2	assembly: cccacac (sig=0.58; e-value=0.26)	RC: gtgtggg
oligos_7nt_test_vs_ctrl_m3	assembly: tcaccca (sig=0.17; e-value=0.68)	RC: tgggtga
oligos_7nt_test_vs_ctrl_m4	assembly: agacaaa (sig=0.02; e-value=0.95)	RC: tttgtct
oligos_7nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=1.64; evalue=0.023

RRwGAGTGCrGk

MCYGCACTCWYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (82.35%)
Max nb of predicted sites per peak: 3
(T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204)
Mean nb of predicted sites per peak: 1.57

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=0.88; evalue=0.13

awGTCCTArG

CYTAGGACWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (29.41%)
Max nb of predicted sites per peak: 2
(107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142)
Mean nb of predicted sites per peak: 1.40

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=0.32; evalue=0.48

KkGGGTGAdK

MHTCACCCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (76.47%)
Max nb of predicted sites per peak: 5
(T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445)
Mean nb of predicted sites per peak: 2.23

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.17; evalue=0.68

wmATTCACmy

RKGTGAATKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5 (29.41%)
Max nb of predicted sites per peak: 2
(107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499)
Mean nb of predicted sites per peak: 1.40

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_7nt_test_vs_ctrl_m1

k-mer sig=1.61; evalue=0.025

aKAGTGCAGGtG

CACCTGCACTMT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 2
(T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204)
Mean nb of predicted sites per peak: 1.50

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m2

k-mer sig=0.58; evalue=0.26

atCCCACACar

YTGTGTGGGAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 1
(MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2)
Mean nb of predicted sites per peak: 1.00

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m3

k-mer sig=0.17; evalue=0.68

atTCACCCAaw

WTTGGGTGAAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 2
(gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951)
Mean nb of predicted sites per peak: 1.25

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.02; evalue=0.95

aaAGACAAARt

AYTTTGTCTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 3
(T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204)
Mean nb of predicted sites per peak: 1.71

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: p300_heart_versus_limb_Blow2010 (08/06/2026 20:05)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results