; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/13/matrix-scan_2026-06-13.160814_ySOQ4F.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 3 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/13/tmp_sequence_2026-06-13.160814_zRjOll.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/13/tmp_sequence_2026-06-13.160814_zRjOll.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/13/matrix-scan_2026-06-13.160814_ySOQ4F.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34387
;		c	0.18831
;		g	0.15074
;		t	0.31707
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	3    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-138	-125	GAATCATGCCTTTT	10.7	1.6e-06	-13.374	5.808	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1408	-1395	TATTTATGCTTTTG	4.6	9.2e-04	-6.995	3.038	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-122	-109	GTTTCATGCCACTA	9.3	1.2e-05	-11.304	4.909	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-891	-878	TTCTCATGCTTGTT	5.9	3.4e-04	-7.987	3.469	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1403	-1390	GAGTTATGCCAATT	5.0	6.9e-04	-7.279	3.161	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1361	-1348	CATACATTCCTTTC	4.9	7.4e-04	-7.211	3.132	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-107	-94	GATTCATGCCTTTG	12.0	5.2e-08	-16.764	7.280	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-62	-49	GAAGCATGCCGCTG	7.6	7.2e-05	-9.535	4.141	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-64	-51	GCGGCATGCTTCGA	6.2	2.7e-04	-8.228	3.574	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-71	-58	GCTTCGAGCCTTGG	6.1	2.9e-04	-8.151	3.540	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1452	-1439	GTTTCATGGTTCTA	4.6	9.2e-04	-6.995	3.038	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-653	-640	ATGTCATGCTCTTA	4.5	9.9e-04	-6.916	3.004	6	6
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1042	-1029	TGTTCATCCCTTCT	6.6	1.8e-04	-8.597	3.734	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-685	-672	GATTCGTGCTTCTT	6.1	2.9e-04	-8.151	3.540	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-694	-681	GAATCAAGCCATGG	5.9	3.4e-04	-7.987	3.469	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-697	-684	NNNCCATGGCTTGA	5.8	3.7e-04	-7.899	3.431	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	2	15	GAATTATGCCNNNN	5.6	4.3e-04	-7.745	3.364	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-322	-309	ATATCATGNNNNNN	4.8	8.0e-04	-7.131	3.097	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1109	-1096	GACTCACGCCCTTT	7.8	6.0e-05	-9.728	4.225	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-313	-300	GATTCATGCAGATA	6.6	1.8e-04	-8.597	3.734	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	16	29	GAATTATGCCTATA	6.1	2.9e-04	-8.151	3.540	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-420	-407	GAATCAAGCCATCC	6.0	3.2e-04	-8.061	3.501	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-411	-398	GATTCGTGCTTCCC	5.7	4.0e-04	-7.817	3.395	5	5
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-167	-154	TTCTCATGCATCCG	6.3	2.4e-04	-8.322	3.614	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-66	-53	TTCTCATGCATCCA	5.6	4.3e-04	-7.745	3.364	2	2
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-712	-699	TCTTCAAGCCTAAC	6.5	2.0e-04	-8.496	3.690	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-155	-142	GTTACATGGCTTTT	6.4	2.2e-04	-8.414	3.654	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-998	-985	TAGCCATGGCGTAC	5.3	5.5e-04	-7.511	3.262	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-210	-197	GTTTCATGCAAACA	5.3	5.5e-04	-7.511	3.262	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-201	-188	GAAACATGCCAATA	5.2	5.9e-04	-7.428	3.226	5	5
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-996	-983	ACGCCATGGCTACC	4.6	9.2e-04	-6.995	3.038	6	6
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	8	21	CGATCAAGCCTTGA	7.0	1.3e-04	-8.947	3.885	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1165	-1152	CACACATGCATTAC	5.1	6.4e-04	-7.360	3.196	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-133	-120	GTCTCATGCCTTTT	10.8	1.2e-06	-13.634	5.921	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-108	-95	TATTCACGCCAAAA	6.2	2.7e-04	-8.228	3.574	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-146	-133	TTCCCATGCTTTTT	5.4	5.1e-04	-7.589	3.296	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1092	-1079	CATTCTCGCCATAA	4.5	9.9e-04	-6.916	3.004	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-381	-368	GAGTCATGCTTTGA	8.2	4.0e-05	-10.119	4.395	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	77	90	TATTCACGCCGAAG	7.2	1.1e-04	-9.143	3.971	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	52	65	GTCCTATGCCTTTA	5.7	4.0e-04	-7.817	3.395	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	179	192	CATTCATCCCAAGT	4.6	9.2e-04	-6.995	3.038	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-54	-41	GTCCCATGCCTTTA	9.2	1.4e-05	-11.168	4.850	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-693	-680	GAGTCATGCTTTGA	8.2	4.0e-05	-10.119	4.395	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-79	-66	GTCCCATGCCGGAT	6.9	1.4e-04	-8.864	3.849	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-925	-912	GATGCATGCTTATA	6.8	1.6e-04	-8.769	3.808	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-29	-16	TATTCACGCCGAAA	6.8	1.6e-04	-8.769	3.808	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-45	-32	GGGACATGCCGAGC	6.2	2.7e-04	-8.228	3.574	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1220	-1207	GTTTCATTCCGTCC	5.9	3.4e-04	-7.987	3.469	7	7
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-146	-133	CTTCCATTCCTTCA	4.9	7.4e-04	-7.211	3.132	8	8
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	82	95	CATTCATCCCAAGT	4.6	9.2e-04	-6.995	3.038	9	9
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-117	-104	GTCCCATGCCTTTA	9.2	1.4e-05	-11.168	4.850	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-92	-79	TATTCACGCCAAAA	6.2	2.7e-04	-8.228	3.574	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-572	-559	AATAAATGCCTTCT	4.7	8.6e-04	-7.059	3.066	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	0	13	GTTTCATGCCTTTC	11.5	2.5e-07	-15.186	6.595	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	53	66	GAAGCACGCCGCTG	6.1	2.9e-04	-8.151	3.540	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-234	-221	NNNNNNNGCCGCTA	4.5	9.9e-04	-6.916	3.004	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1486	-1473	CAACCATGCCTAGT	8.1	4.4e-05	-10.023	4.353	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1457	-1444	CAACCATGCCTAGT	8.1	4.4e-05	-10.023	4.353	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1474	-1461	GTCTCACGCTTCTC	5.8	3.7e-04	-7.899	3.431	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-987	-974	GGTTCATGTCTAAA	5.8	3.7e-04	-7.899	3.431	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1228	-1215	GAGTCATGACCTTC	5.6	4.3e-04	-7.745	3.364	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-506	-493	CTTGCATGCACTAT	4.8	8.0e-04	-7.131	3.097	6	6
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1085	-1072	GTTTAATGCATTCA	4.7	8.6e-04	-7.059	3.066	7	7
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-883	-870	AGTCCATGCCTCTC	8.5	3.0e-05	-10.428	4.529	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-138	-125	GAAGCATGCCATAT	7.8	6.0e-05	-9.728	4.225	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-894	-881	GAACCATGCATAGT	5.8	3.7e-04	-7.899	3.431	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-140	-127	ATGGCATGCTTCGT	4.9	7.4e-04	-7.211	3.132	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-891	-878	AGTCCATGCCTCTC	8.5	3.0e-05	-10.428	4.529	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-138	-125	GAAGCATGCCATCT	7.8	6.0e-05	-9.728	4.225	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1062	-1049	TTTCCACGCCTCAC	6.9	1.4e-04	-8.864	3.849	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-496	-483	TATTCATGACTCAA	6.2	2.7e-04	-8.228	3.574	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-902	-889	GAACCATGCATAGT	5.8	3.7e-04	-7.899	3.431	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-296	-283	CAAACATGCCAGTT	4.9	7.4e-04	-7.211	3.132	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-140	-127	ATGGCATGCTTCGT	4.9	7.4e-04	-7.211	3.132	7	7
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-541	-528	TATTCATGACTCAG	6.6	1.8e-04	-8.597	3.734	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1248	-1235	GAACCATGCCCAGT	6.2	2.7e-04	-8.228	3.574	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1236	-1223	GTCCCATGCTTCTC	5.8	3.7e-04	-7.899	3.431	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	70	83	CCTTTACGCCGTTT	4.7	8.6e-04	-7.059	3.066	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1410	-1397	GATTCAACCCTACG	4.5	9.9e-04	-6.916	3.004	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-551	-538	TATTCATGACTCAG	6.6	1.8e-04	-8.597	3.734	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-992	-979	GAACCATGCCCAGT	6.2	2.7e-04	-8.228	3.574	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-980	-967	GTACCATGCTTCTC	5.8	3.7e-04	-7.899	3.431	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-109	-96	TTGTCATTCCTTTC	5.5	4.7e-04	-7.658	3.326	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	70	83	CCTTTACGCCGTTT	4.7	8.6e-04	-7.059	3.066	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1127	-1114	GATTCAACCCTACG	4.5	9.9e-04	-6.916	3.004	6	6
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-1006	-993	TTGTTATGCCACGC	4.5	9.9e-04	-6.916	3.004	7	7
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-804	-791	GAGCCTTGCCTCAT	6.1	2.9e-04	-8.151	3.540	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-866	-853	AGGTCATGCATCCT	5.9	3.4e-04	-7.987	3.469	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-109	-96	TTGTCATTCCTTTC	5.5	4.7e-04	-7.658	3.326	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-864	-851	GATGCATGACCTTC	4.9	7.4e-04	-7.211	3.132	4	4
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	70	83	CCTTTACGCCGTTT	4.7	8.6e-04	-7.059	3.066	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-19	-6	AATTCATGCCGGGC	8.2	4.0e-05	-10.119	4.395	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-263	-250	GTTGCATGCCCCAC	6.9	1.4e-04	-8.864	3.849	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-805	-792	CGGTCATGCTATCC	6.3	2.4e-04	-8.322	3.614	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-317	-304	CATTCATCCCATTT	5.8	3.7e-04	-7.899	3.431	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-176	-163	GCATCATGCGGGCT	5.2	5.9e-04	-7.428	3.226	5	5
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-431	-418	CGGACATGCCGGAT	5.8	3.7e-04	-7.899	3.431	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-579	-566	NNNNNNNGCCGTTC	5.1	6.4e-04	-7.360	3.196	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-1029	-1016	TACTCATGCAGGGG	4.6	9.2e-04	-6.995	3.038	3	3
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-204	-191	GGTTCACGCTGGTT	4.5	9.9e-04	-6.916	3.004	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-220	-207	CATGCATGCATTAT	7.2	1.1e-04	-9.143	3.971	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-664	-651	NNNNNACGCCTCCA	5.6	4.3e-04	-7.745	3.364	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	-182	-169	TTAGCATGCTTTTT	5.3	5.5e-04	-7.511	3.262	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	-218	-205	AATGCATGCATGTA	5.1	6.4e-04	-7.360	3.196	4	4
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	36	49	CATGCATGCATTAT	7.2	1.1e-04	-9.143	3.971	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m5oligos_6-8nt_m5	R	74	87	TTAGCATGCTTTTT	5.3	5.5e-04	-7.511	3.262	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m5oligos_6-8nt_m5	D	38	51	AATGCATGCATGTA	5.1	6.4e-04	-7.360	3.196	3	3
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m5oligos_6-8nt_m5	14	4	1	-24.800	12.600	37.400	a:0.344 c:0.188 g:0.151 t:0.317 
; Number of sequences scanned	28
; Sum of sequence lengths	44216
; N residues           	10767
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m5oligos_6-8nt_m5	107	87704
;		TOTAL          	107	87704
; Host name	rsat
; Job started	2026-06-13.160814
; Job done	2026-06-13.160822
; Seconds	7.93
;	user	7.93
;	system	0.03
;	cuser	0.09
;	csystem	0.04