; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.032231_IymCPP.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.032231_Jvewvi.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.032231_Jvewvi.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.032231_IymCPP.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34415
;		c	0.20814
;		g	0.14683
;		t	0.30088
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-136	-119	GTTCATGAATCATGCCTT	10.9	2.1e-06	-13.082	5.681	1	1
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-135	-118	AGGCATGATTCATGAACC	4.3	2.6e-04	-8.239	3.578	2	2
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-76	-59	GTGCNNNNNNNNNNNNNN	2.9	6.1e-04	-7.409	3.217	3	3
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-209	-192	NNNNNNNNNNNNGGNNNN	2.2	8.9e-04	-7.023	3.050	4	4
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-110	-93	CTGTCTGTCGCCTGTCGG	7.3	3.6e-05	-10.219	4.438	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-412	-395	CCGACTGAGAAGAGGCGA	3.1	5.4e-04	-7.528	3.270	2	2
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-48	-31	ATCCCCGGCCCAGGGCAT	2.4	8.0e-04	-7.128	3.096	3	3
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-364	-347	CTGNNNNNNNNNNNNNNN	2.6	7.1e-04	-7.245	3.146	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-469	-452	CGGTNNNNNNNNNNNNNN	2.4	8.0e-04	-7.128	3.096	2	2
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	180	197	CCGCACATAGTGGGCCGG	2.1	9.4e-04	-6.968	3.026	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-128	-111	CTGAATGTTTCATGCCAC	10.8	2.3e-06	-12.984	5.639	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-129	-112	TGGCATGAAACATTCAGC	6.0	9.0e-05	-9.316	4.046	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-157	-140	ATGCCTGCNNNNNNNNNN	4.9	1.8e-04	-8.611	3.740	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-156	-139	NNNNNNNNNGCAGGCATA	4.1	3.0e-04	-8.118	3.525	4	4
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-161	-144	CTGCNNNNNNNNNNNNNN	3.9	3.4e-04	-7.991	3.471	5	5
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-219	-202	CTGNNNNNNNNNNNNNNN	2.6	7.1e-04	-7.245	3.146	6	6
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-51	-34	NNNNNNNNNNNNNNNCTA	2.0	9.9e-04	-6.914	3.003	7	7
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	44	61	ATGTACGCTACTTGTTGT	2.0	9.9e-04	-6.914	3.003	8	8
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-69	-52	CGGCATGCTTCGAGCCTT	13.0	2.8e-07	-15.102	6.559	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-68	-51	AGGCTCGAAGCATGCCGC	11.9	8.3e-07	-14.006	6.083	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-105	-88	GCGGATGATTCATGCCTT	11.3	1.5e-06	-13.444	5.839	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-104	-87	AGGCATGAATCATCCGCG	2.9	6.1e-04	-7.409	3.217	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-174	-157	GGGTATGTATGAAGTCAA	2.5	7.6e-04	-7.183	3.120	5	5
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-11	6	CGGGTTGATAATGGCCGC	7.7	2.8e-05	-10.501	4.560	1	1
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-95	-78	ATGCCTNNNNNNNNNNNN	4.3	2.6e-04	-8.239	3.578	2	2
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-94	-77	NNNNNNNNNNNAGGCATT	3.3	4.8e-04	-7.644	3.320	3	3
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-446	-429	NNNNNNNNNNNNNGTCGG	2.3	8.4e-04	-7.078	3.074	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-7	10	ATGCCNNNNNNNNNNNNN	3.3	4.8e-04	-7.644	3.320	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-6	11	NNNNNNNNNNNNGGCATA	2.4	8.0e-04	-7.128	3.096	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-238	-221	ATGCATGTTTGGANNNNN	2.1	9.4e-04	-6.968	3.026	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	5	22	NGGCATAATTCTGATCGA	2.1	9.4e-04	-6.968	3.026	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-331	-314	ATGNNNNNNNNNNNNNNN	2.0	9.9e-04	-6.914	3.003	5	5
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-418	-401	AAGCACGAATCAAGCCAT	9.4	7.4e-06	-11.811	5.130	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-310	-293	CTGCATGAATCATGTTGT	8.5	1.5e-05	-11.105	4.823	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-417	-400	TGGCTTGATTCGTGCTTC	6.4	6.8e-05	-9.592	4.166	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-311	-294	CAACATGATTCATGCAGA	6.0	9.0e-05	-9.316	4.046	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-215	-198	CTGCNNNNNNNNNNNNNN	3.9	3.4e-04	-7.991	3.471	5	5
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-219	-202	CTGACTGCNNNNNNNNNN	2.9	6.1e-04	-7.409	3.217	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-216	-199	NNNNNNNNNNNNNGCAGT	2.9	6.1e-04	-7.409	3.217	7	7
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	32	49	NNGCTTGACTTTGGCAAT	2.9	6.1e-04	-7.409	3.217	8	8
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-449	-432	CTGNNNNNNNNNNNNNNN	2.6	7.1e-04	-7.245	3.146	9	9
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	39	56	NNNNNNNNNGCTTGACTT	2.1	9.4e-04	-6.968	3.026	10	10
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-174	-157	ATGCATGAGAATGGCCTT	11.7	1.0e-06	-13.806	5.996	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-73	-56	ATGCATGAGAATGGCCTT	11.7	1.0e-06	-13.806	5.996	2	2
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-234	-217	ATGTATGTNNNNNNNNNN	4.5	2.4e-04	-8.355	3.629	3	3
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-162	-145	ATGCATCCGACAGNNNNN	4.5	2.4e-04	-8.355	3.629	4	4
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-163	-146	NNNNCTGTCGGATGCATG	3.1	5.4e-04	-7.528	3.270	5	5
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-91	-74	NNNNNNNNNNNNNNCCAT	2.8	6.4e-04	-7.352	3.193	6	6
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-173	-156	AGGCCATTCTCATGCATC	2.4	8.0e-04	-7.128	3.096	7	7
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-72	-55	AGGCCATTCTCATGCATC	2.4	8.0e-04	-7.128	3.096	8	8
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	1	18	CCGTTTGGTACNNNNNNN	2.5	7.6e-04	-7.183	3.120	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-207	-190	TTGCATGAAACATGCCAA	12.1	6.9e-07	-14.190	6.162	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-208	-191	TGGCATGTTTCATGCAAA	10.0	4.5e-06	-12.304	5.344	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-153	-136	TGTCATGTTACATGGCTT	7.3	3.6e-05	-10.219	4.438	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-152	-135	AGCCATGTAACATGACAT	6.6	6.0e-05	-9.729	4.225	4	4
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-130	-113	AGGCATGAGACAGGCCGA	17.5	3.2e-10	-21.871	9.499	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-131	-114	CGGCCTGTCTCATGCCTT	16.8	1.5e-09	-20.315	8.823	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-378	-361	CGTAATGGATCGGGCCAG	7.8	2.6e-05	-10.574	4.592	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-377	-360	TGGCCCGATCCATTACGA	4.5	2.4e-04	-8.355	3.629	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-435	-418	TGGCCTCGATCTTGGCGG	3.1	5.4e-04	-7.528	3.270	5	5
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-446	-429	TCGATCGCTACTGGCCTC	2.6	7.1e-04	-7.245	3.146	6	6
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	30	47	CAGCATGGGGCAGGCCGA	13.7	1.3e-07	-15.848	6.883	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	54	71	TGGCATGTCCTATGCCTT	11.0	1.9e-06	-13.172	5.721	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	55	72	AGGCATAGGACATGCCAA	10.9	2.1e-06	-13.082	5.681	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	29	46	CGGCCTGCCCCATGCTGG	10.2	3.9e-06	-12.464	5.413	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-439	-422	GTGTATGTAACATGTTGT	5.3	1.4e-04	-8.865	3.850	5	5
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	80	97	CGGCGTGAATATGGCACT	3.1	5.4e-04	-7.528	3.270	6	6
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	79	96	GTGCCATATTCACGCCGA	2.3	8.4e-04	-7.078	3.074	7	7
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-76	-59	CGGCATGGGACAGGCCGA	17.7	2.0e-10	-22.354	9.708	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-51	-34	AGGCATGGGACATGCCGA	17.3	5.1e-10	-21.395	9.292	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-52	-35	CGGCATGTCCCATGCCTT	17.0	9.7e-10	-20.754	9.013	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-77	-60	CGGCCTGTCCCATGCCGG	16.3	3.7e-09	-19.413	8.431	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-16	1	TGGACTAAGGAGTGCCAT	3.3	4.8e-04	-7.644	3.320	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-26	-9	CGGCGTGAATATGGCACT	3.1	5.4e-04	-7.528	3.270	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-27	-10	GTGCCATATTCACGCCGA	2.3	8.4e-04	-7.078	3.074	7	7
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-114	-97	AGGCATGGGACGGGCCGA	16.0	6.1e-09	-18.920	8.217	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-115	-98	CGGCCCGTCCCATGCCTT	15.4	1.5e-08	-17.994	7.815	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-109	-92	TGGGACGGGCCGAGCAAT	5.6	1.2e-04	-9.059	3.934	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-63	-46	TGGGCTTGGAACGGCCGT	4.2	2.8e-04	-8.172	3.549	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-110	-93	TTGCTCGGCCCGTCCCAT	3.9	3.4e-04	-7.991	3.471	5	5
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-63	-46	ACGGCCGTTCCAAGCCCA	3.5	4.3e-04	-7.755	3.368	6	6
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-64	-47	GGGCTTGGAACGGCCGTT	2.7	6.7e-04	-7.301	3.171	7	7
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	2	19	TGCGATGTTTCATGCCTT	8.3	1.8e-05	-10.953	4.757	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	47	64	CAGCTCGAAGCACGCCGC	6.4	6.8e-05	-9.592	4.166	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	46	63	CGGCGTGCTTCGAGCTGT	5.8	1.0e-04	-9.184	3.988	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-240	-223	NNNNNNNNNNNNNGCCGC	5.3	1.4e-04	-8.865	3.850	4	4
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-241	-224	CGGCNNNNNNNNNNNNNN	5.2	1.5e-04	-8.795	3.819	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	3	20	AGGCATGAAACATCGCAA	5.2	1.5e-04	-8.795	3.819	6	6
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-122	-105	NNNACCGAACAGGGCCTT	4.1	3.0e-04	-8.118	3.525	7	7
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	114	131	CGGATTGGTAAGTGCGTG	3.2	5.1e-04	-7.586	3.295	8	8
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-204	-187	NNNNNTGGTANNNNNNNN	2.7	6.7e-04	-7.301	3.171	9	9
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-133	-116	CGGTNNNNNNNNNNNNNN	2.4	8.0e-04	-7.128	3.096	10	10
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-112	-95	TTGGAAGTCTAAGGCCCT	2.1	9.4e-04	-6.968	3.026	11	11
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-373	-356	NNNNNNNNNNNNNNNCTA	2.0	9.9e-04	-6.914	3.003	12	12
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	24	41	AAGCATGGTGAGAGCCAT	6.5	6.4e-05	-9.653	4.192	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-501	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-144	-127	GTAGACGAAGCATGCCAT	5.7	1.1e-04	-9.118	3.960	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-144	-127	GTAGACGAAGCATGCCAT	5.7	1.1e-04	-9.118	3.960	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-134	-117	AAGCATGGTGAGAGCCAT	6.5	6.4e-05	-9.653	4.192	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-173	-156	CCGCNNNNNNNNNNNNNN	2.8	6.4e-04	-7.352	3.193	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-501	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-144	-127	AAGCATGGTGAGAGCCAT	6.5	6.4e-05	-9.653	4.192	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-501	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-144	-127	AAGCATGGTGAGAGCCAT	6.5	6.4e-05	-9.653	4.192	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-344	-327	CGNNNNNNNNNNNNNNNN	2.3	8.4e-04	-7.078	3.074	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-183	-166	CCGCATGATGCATGTAAT	7.6	2.9e-05	-10.435	4.532	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-142	-125	TTACATGTATCTTGTCAT	4.0	3.2e-04	-8.051	3.497	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-178	-161	ATGCATCATGCGGGCTTT	3.6	4.0e-04	-7.819	3.396	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-182	-165	TTACATGCATCATGCGGG	2.9	6.1e-04	-7.409	3.217	4	4
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-171	-154	AAACATGTAACTTGCCAT	6.1	8.4e-05	-9.390	4.078	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-437	-420	AGCGATCGGACATGCCGG	5.8	1.0e-04	-9.184	3.988	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-438	-421	CGGCATGTCCGATCGCTG	3.2	5.1e-04	-7.586	3.295	3	3
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-172	-155	TGGCAAGTTACATGTTTG	2.7	6.7e-04	-7.301	3.171	4	4
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-110	-93	TTGCANNNNNNNNNNNNN	2.7	6.7e-04	-7.301	3.171	5	5
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-409	-392	CTGNNNNNNNNNNNNNNN	2.6	7.1e-04	-7.245	3.146	6	6
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-211	-194	CAGCGTGAACCATGTTAT	2.1	9.4e-04	-6.968	3.026	7	7
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-124	-107	NNNNNNNNNNNNNNCCAA	2.1	9.4e-04	-6.968	3.026	8	8
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-501	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-224	-207	CTGAATAATGCATGCATG	3.7	3.8e-04	-7.878	3.422	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-474	-457	ACGCTTTGGTCCTACCGT	2.3	8.4e-04	-7.078	3.074	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	32	49	CTGAATAATGCATGCATG	3.7	3.8e-04	-7.878	3.422	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-219	-202	ACGCTTTAGTCCTACCGT	2.8	6.4e-04	-7.352	3.193	2	2
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-92	-75	NNNNNNNNNNNNNNCCAG	2.0	9.9e-04	-6.914	3.003	1	1
;
; Matrices
;	matrix	name                                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	18	4	1	-38.100	19.000	57.100	a:0.344 c:0.208 g:0.147 t:0.301 
; Number of sequences scanned	28
; Sum of sequence lengths	19114
; N residues           	3270
; Matches per matrix
;	matrix	name                                      	matches	scored
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	119	37276
;		TOTAL          	119	37276
; Host name	rsat
; Job started	2026-06-17.032231
; Job done	2026-06-17.032236
; Seconds	4.67
;	user	4.67
;	system	0.02
;	cuser	0.11
;	csystem	0.02