; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.042328_8KrAyL.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.042328_NATeqo.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.042328_NATeqo.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.042328_8KrAyL.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-139	-125	GAATCATGCCTTTTA	12.6	1.5e-07	-15.735	6.834	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1033	-1019	GTAACATGTCACTTA	7.4	7.7e-05	-9.478	4.116	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-122	-108	GTTTCATGCCACTAC	8.5	2.9e-05	-10.464	4.544	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-108	-94	GATTCATGCCTTTGT	11.1	1.6e-06	-13.350	5.798	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-62	-48	GAAGCATGCCGCTGA	9.3	1.3e-05	-11.218	4.872	2	2
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-242	-228	CAAACATGCATTTAC	7.9	4.9e-05	-9.916	4.307	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	1	15	GAATTATGCCNNNNN	7.4	7.7e-05	-9.478	4.116	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	15	29	GAATTATGCCTATAT	7.9	4.9e-05	-9.916	4.307	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-201	-187	GAAACATGCCAATAT	9.6	9.9e-06	-11.522	5.004	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-156	-142	GTTACATGGCTTTTG	8.1	4.2e-05	-10.085	4.380	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1206	-1192	TGCACATGCCAATAC	7.7	5.9e-05	-9.730	4.226	3	3
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-134	-120	GTCTCATGCCTTTTT	12.3	2.5e-07	-15.213	6.607	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	51	65	GTCCTATGCCTTTAA	8.6	2.6e-05	-10.544	4.579	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-55	-41	GTCCCATGCCTTTAA	11.2	1.4e-06	-13.509	5.867	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1245	-1231	GGCCCATCCCGTTTA	7.6	6.4e-05	-9.650	4.191	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-118	-104	GTCCCATGCCTTTAC	12.0	4.1e-07	-14.708	6.388	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1297	-1283	GTTACATGTCGTTTT	7.8	5.4e-05	-9.820	4.265	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1044	-1030	GTTACATGTCGTTTT	7.8	5.4e-05	-9.820	4.265	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1	13	GTTTCATGCCTTTCC	10.6	3.1e-06	-12.695	5.513	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1486	-1472	CAACCATGCCTAGTC	7.6	6.4e-05	-9.650	4.191	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1457	-1443	CAACCATGCCTAGTC	7.6	6.4e-05	-9.650	4.191	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-124	GAAGCATGCCATATA	9.7	8.9e-06	-11.631	5.051	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-301	-287	AAAACATGCCAGTTT	7.6	6.4e-05	-9.650	4.191	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-883	-869	AGTCCATGCCTCTCC	7.1	9.9e-05	-9.224	4.006	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-124	GAAGCATGCCATCTA	9.9	7.1e-06	-11.852	5.147	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-296	-282	CAAACATGCCAGTTT	7.4	7.7e-05	-9.478	4.116	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-891	-877	AGTCCATGCCTCTCC	7.1	9.9e-05	-9.224	4.006	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-296	-282	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-306	-292	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-306	-292	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-877	-863	GAAACATGACATTAG	7.7	5.9e-05	-9.730	4.226	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-165	-151	GTAACTTGCCATTTG	7.1	9.9e-05	-9.224	4.006	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-756	-742	GACACTTGCCATTTT	7.2	9.1e-05	-9.300	4.039	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
;
; Matrices
;	matrix	name                            	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	15	4	1	-29.000	14.100	43.100	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                            	matches	scored
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	33	101144
;		TOTAL          	33	101144
; Host name	rsat
; Job started	2026-06-17.042328
; Job done	2026-06-17.042337
; Seconds	9.41
;	user	9.41
;	system	0.01
;	cuser	0.09
;	csystem	0.02