; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.044934_PD6XkD.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.044934_vIyPe1.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.044934_vIyPe1.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.044934_PD6XkD.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34242 ; c 0.18661 ; g 0.15145 ; t 0.31953 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -255 199 . 0 0 0 0 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -136 -118 GGTTCATGAATCATGCCTT 8.4 2.6e-05 -10.559 4.586 1 1 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -1501 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -44 -26 TGACAATGCCCTGGGCCGG 7.1 9.7e-05 -9.242 4.014 1 1 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -845 -827 TTAGCATGGACAATGCCAT 8.8 1.7e-05 -10.982 4.769 1 1 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -129 -111 GCTGAATGTTTCATGCCAC 7.7 5.4e-05 -9.823 4.266 2 2 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -1501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -69 -51 GCGGCATGCTTCGAGCCTT 12.3 1.9e-07 -15.500 6.732 1 1 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -727 -709 GGTACAAGCAACAAGCCTA 8.6 2.1e-05 -10.763 4.674 2 2 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -66 -48 GCTCGAAGCATGCCGCTGA 7.5 6.6e-05 -9.624 4.179 3 3 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -1501 199 . 0 0 0 0 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -1501 199 . 0 0 0 0 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -692 -674 GAAGCACGAATCAAGCCAT 7.9 4.4e-05 -10.037 4.359 1 1 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R 134 152 GAACCAAGCCCTGAGCCGG 7.3 8.0e-05 -9.436 4.098 2 2 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -418 -400 GAAGCACGAATCAAGCCAT 7.9 4.4e-05 -10.037 4.359 1 1 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -208 -190 TTTGCATGAAACATGCCAA 9.5 7.6e-06 -11.788 5.119 1 1 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -153 -135 AAGCCATGTAACATGACAT 7.4 7.2e-05 -9.535 4.141 2 2 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -1501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -1501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -378 -360 TCGTAATGGATCGGGCCAG 10.3 2.9e-06 -12.752 5.538 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -131 -113 AAGGCATGAGACAGGCCGA 10.1 3.8e-06 -12.493 5.426 2 2 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -131 -113 TCGGCCTGTCTCATGCCTT 9.5 7.6e-06 -11.788 5.119 3 3 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -78 -60 TGGGCTTGGAACGCCCGTT 8.7 1.9e-05 -10.872 4.722 4 4 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -665 -647 CGTGAATGTCAGGTGCCTA 8.5 2.3e-05 -10.666 4.632 5 5 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -1501 199 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D 29 47 CCAGCATGGGGCAGGCCGA 10.0 4.2e-06 -12.383 5.378 1 1 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D 54 72 AAGGCATAGGACATGCCAA 9.5 7.6e-06 -11.788 5.119 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R 29 47 TCGGCCTGCCCCATGCTGG 8.4 2.6e-05 -10.559 4.586 3 3 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R 54 72 TTGGCATGTCCTATGCCTT 8.2 3.2e-05 -10.337 4.489 4 4 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -1501 199 . 0 0 0 0 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -77 -59 CCGGCATGGGACAGGCCGA 13.0 6.1e-08 -16.605 7.212 1 1 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -52 -34 AAGGCATGGGACATGCCGA 12.9 7.2e-08 -16.441 7.140 2 2 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -52 -34 TCGGCATGTCCCATGCCTT 10.7 1.8e-06 -13.247 5.753 3 3 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1203 -1185 ACGGGACGGAACACGACGC 9.8 5.4e-06 -12.130 5.268 4 4 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -77 -59 TCGGCCTGTCCCATGCCGG 9.2 1.1e-05 -11.430 4.964 5 5 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1159 -1141 ACGGGACGGCCCGTCCCGT 9.1 1.2e-05 -11.316 4.915 6 6 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1312 -1294 ACGGGATGGGACGGGACAA 9.0 1.3e-05 -11.215 4.871 7 7 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1169 -1151 CCGGAATGGGACGGGACGG 8.7 1.9e-05 -10.872 4.722 8 8 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1327 -1309 GCGGGACGGGACATGACGG 8.6 2.1e-05 -10.763 4.674 9 9 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -1327 -1309 CCGTCATGTCCCGTCCCGC 8.2 3.2e-05 -10.337 4.489 10 10 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -1159 -1141 ACGGGACGGGCCGTCCCGT 8.1 3.6e-05 -10.233 4.444 11 11 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -1164 -1146 ATGGGACGGGACGGCCCGT 7.6 5.9e-05 -9.733 4.227 12 12 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -1501 199 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -115 -97 AAGGCATGGGACGGGCCGA 13.2 4.5e-08 -16.919 7.348 1 1 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -64 -46 TGGGCTTGGAACGGCCGTT 7.8 4.9e-05 -9.925 4.310 2 2 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -110 -92 ATTGCTCGGCCCGTCCCAT 7.2 8.9e-05 -9.329 4.052 3 3 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R 46 64 GCGGCGTGCTTCGAGCTGT 8.2 3.2e-05 -10.337 4.489 1 1 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D 46 64 ACAGCTCGAAGCACGCCGC 7.6 5.9e-05 -9.733 4.227 2 2 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D 49 67 GCTCGAAGCACGCCGCTGA 7.3 8.0e-05 -9.436 4.098 3 3 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -890 -872 GAGGCATGGACTATGCATG 9.3 9.6e-06 -11.556 5.019 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -898 -880 GAGGCATGGACTATGCATG 9.3 9.6e-06 -11.556 5.019 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -1243 -1225 GAAGCATGGGACTGGGCAT 8.4 2.6e-05 -10.559 4.586 1 1 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 R -987 -969 GAAGCATGGTACTGGGCAT 7.4 7.2e-05 -9.535 4.141 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -183 -165 ATTACATGCATCATGCGGG 8.5 2.3e-05 -10.666 4.632 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -263 -245 GTTGCATGCCCCACGGTGG 8.0 4.0e-05 -10.129 4.399 2 2 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D 50 68 GCAAAATGGCACCTACCAC 7.8 4.9e-05 -9.925 4.310 1 1 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -894 -876 TCTGAATGGCCAGTGCCAA 7.3 8.0e-05 -9.436 4.098 1 1 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 D -43 -25 ATGGCATGCCAATTGCCTA 7.7 5.4e-05 -9.823 4.266 1 1 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 19 4 1 -27.200 17.400 44.600 a:0.342 c:0.187 g:0.151 t:0.320 ; Number of sequences scanned 32 ; Sum of sequence lengths 51020 ; N residues 10767 ; Matches per matrix ; matrix name matches scored ; 1 dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2 48 100888 ; TOTAL 48 100888 ; Host name rsat ; Job started 2026-06-17.044934 ; Job done 2026-06-17.044945 ; Seconds 11.42 ; user 11.42 ; system 0.02 ; cuser 0.09 ; csystem 0.01