; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.045105_rOZpwd.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.045105_UGcgy0.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.045105_UGcgy0.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.045105_rOZpwd.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34242 ; c 0.18661 ; g 0.15145 ; t 0.31953 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -255 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -1501 199 . 0 0 0 0 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -1501 199 . 0 0 0 0 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 site oligos_6-8nt_m5oligos_6-8nt_m5 D -1030 -1019 GTGACATGTTAC 7.1 1.0e-04 -9.211 4.000 1 1 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m5oligos_6-8nt_m5 R -122 -111 GTGGCATGAAAC 7.2 9.2e-05 -9.293 4.036 1 1 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -1501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m5oligos_6-8nt_m5 D -62 -51 GAAGCATGCCGC 10.5 3.0e-06 -12.713 5.521 1 1 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m5oligos_6-8nt_m5 R -62 -51 GCGGCATGCTTC 10.5 3.0e-06 -12.713 5.521 2 2 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -1501 199 . 0 0 0 0 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -1501 199 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -1501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -1501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m5oligos_6-8nt_m5 D -313 -302 CGGGCAAGCCGG 8.0 4.5e-05 -10.013 4.348 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m5oligos_6-8nt_m5 R -313 -302 CCGGCTTGCCCG 8.0 4.5e-05 -10.013 4.348 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -1501 199 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m5oligos_6-8nt_m5 R 61 72 TTGGCATGTCCT 7.8 5.5e-05 -9.803 4.257 1 1 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m5oligos_6-8nt_m5 D 61 72 AGGACATGCCAA 7.7 6.0e-05 -9.715 4.219 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m5oligos_6-8nt_m5 D 36 47 GGGGCAGGCCGA 7.2 9.2e-05 -9.293 4.036 3 3 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -1501 199 . 0 0 0 0 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m5oligos_6-8nt_m5 D -45 -34 GGGACATGCCGA 8.4 3.0e-05 -10.401 4.517 1 1 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m5oligos_6-8nt_m5 R -45 -34 TCGGCATGTCCC 8.0 4.5e-05 -10.013 4.348 2 2 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m5oligos_6-8nt_m5 D 53 64 GAAGCACGCCGC 7.5 7.1e-05 -9.548 4.147 1 1 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m5oligos_6-8nt_m5 R 53 64 GCGGCGTGCTTC 7.5 7.1e-05 -9.548 4.147 2 2 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m5oligos_6-8nt_m5 R -506 -495 AGTGCATGCAAG 7.2 9.2e-05 -9.293 4.036 1 1 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m5oligos_6-8nt_m5 D -506 -495 CTTGCATGCACT 7.1 1.0e-04 -9.211 4.000 2 2 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m5oligos_6-8nt_m5 D -138 -127 GAAGCATGCCAT 10.1 5.1e-06 -12.192 5.295 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m5oligos_6-8nt_m5 R -138 -127 ATGGCATGCTTC 10.0 5.6e-06 -12.098 5.254 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m5oligos_6-8nt_m5 D -138 -127 GAAGCATGCCAT 10.1 5.1e-06 -12.192 5.295 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m5oligos_6-8nt_m5 R -138 -127 ATGGCATGCTTC 10.0 5.6e-06 -12.098 5.254 2 2 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m5oligos_6-8nt_m5 D -263 -252 GTTGCATGCCCC 10.6 2.7e-06 -12.823 5.569 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m5oligos_6-8nt_m5 R -263 -252 GGGGCATGCAAC 10.6 2.7e-06 -12.823 5.569 2 2 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m5oligos_6-8nt_m5 D -431 -420 CGGACATGCCGG 9.1 1.5e-05 -11.110 4.825 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m5oligos_6-8nt_m5 R -431 -420 CCGGCATGTCCG 8.9 1.9e-05 -10.880 4.725 2 2 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m5oligos_6-8nt_m5 R -43 -32 TTGGCATGCCAT 10.6 2.7e-06 -12.823 5.569 1 1 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m5oligos_6-8nt_m5 D -43 -32 ATGGCATGCCAA 10.5 3.0e-06 -12.713 5.521 2 2 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m5oligos_6-8nt_m5 12 4 1 -22.200 13.800 36.000 a:0.342 c:0.187 g:0.151 t:0.320 ; Number of sequences scanned 32 ; Sum of sequence lengths 51020 ; N residues 10767 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m5oligos_6-8nt_m5 25 101336 ; TOTAL 25 101336 ; Host name rsat ; Job started 2026-06-17.045105 ; Job done 2026-06-17.045113 ; Seconds 7.91 ; user 7.91 ; system 0.01 ; cuser 0.11 ; csystem 0.02