; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.053930_ktpD8a.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.053930_vbk4mY.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.053930_vbk4mY.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.053930_ktpD8a.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-137	-118	GGTTCATGAATCATGCCTTT	10.4	3.4e-06	-12.580	5.463	1	1
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-136	-117	AAGGCATGATTCATGAACCT	8.3	2.8e-05	-10.480	4.551	2	2
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-65	-46	NNNGCACAAAGCACCCCTTC	4.6	5.8e-04	-7.456	3.238	3	3
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-549	-530	GTAGCACGTTTTACCCCTGN	7.0	8.9e-05	-9.323	4.049	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	67	86	GTTGCATCCTCATCGCCCAC	4.9	4.6e-04	-7.675	3.333	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-653	-634	ATTGCATTCATGTTCGCGTG	4.1	8.2e-04	-7.101	3.084	2	2
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	66	85	TGGGCGATGAGGATGCAACT	4.1	8.2e-04	-7.101	3.084	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-845	-826	TTAGCATGGACAATGCCATC	10.1	4.8e-06	-12.248	5.319	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-129	-110	GCTGAATGTTTCATGCCACT	9.9	5.9e-06	-12.049	5.233	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-846	-827	ATGGCATTGTCCATGCTAAT	9.4	9.7e-06	-11.539	5.012	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-130	-111	GTGGCATGAAACATTCAGCT	6.5	1.4e-04	-8.907	3.868	4	4
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1410	-1391	TATTCAAGAGTTATGCCAAT	3.9	9.5e-04	-6.955	3.021	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-70	-51	GCGGCATGCTTCGAGCCTTG	12.6	2.5e-07	-15.198	6.600	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-69	-50	AAGGCTCGAAGCATGCCGCT	10.7	2.5e-06	-12.900	5.602	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-106	-87	CGCGGATGATTCATGCCTTT	10.4	3.4e-06	-12.580	5.463	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-105	-86	AAGGCATGAATCATCCGCGC	9.3	1.1e-05	-11.440	4.968	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-213	-194	GATGCACTAGTCTTGGCCTC	6.4	1.5e-04	-8.834	3.836	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-727	-708	GGTACAAGCAACAAGCCTAA	5.7	2.6e-04	-8.271	3.592	6	6
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-627	-608	GGTATATTATGCACGCTAGC	4.5	6.3e-04	-7.377	3.204	7	7
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-867	-848	CCATCATGGAGATCGCCAAA	5.3	3.4e-04	-7.973	3.462	1	1
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1290	-1271	GTAGCAAGTTCATTGTCNNN	5.0	4.3e-04	-7.741	3.362	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-693	-674	GAAGCACGAATCAAGCCATG	11.9	6.0e-07	-14.321	6.219	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-692	-673	ATGGCTTGATTCGTGCTTCT	7.6	5.3e-05	-9.848	4.277	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-704	-685	NNNNNNNNNNCCATGGCTTG	5.1	4.0e-04	-7.823	3.397	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	29	48	CAAGCGAGGAGAATCCCCAC	4.4	6.7e-04	-7.313	3.176	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	28	47	TGGGGATTCTCCTCGCTTGA	4.2	7.7e-04	-7.164	3.111	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-686	-667	GAAGTAAGAAGCACGAATCA	4.0	8.9e-04	-7.025	3.051	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-419	-400	GAAGCACGAATCAAGCCATC	11.4	1.1e-06	-13.719	5.958	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-312	-293	ACAACATGATTCATGCAGAT	9.4	9.7e-06	-11.539	5.012	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-311	-292	TCTGCATGAATCATGTTGTC	7.9	4.0e-05	-10.115	4.393	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-418	-399	ATGGCTTGATTCGTGCTTCC	6.5	1.4e-04	-8.907	3.868	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	43	62	CAAGCNNNNNNNNNNNNNNN	4.0	8.9e-04	-7.025	3.051	5	5
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-74	-55	GATGCATGAGAATGGCCTTA	7.0	8.9e-05	-9.323	4.049	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-175	-156	GATGCATGAGAATGGCCTTG	6.2	1.7e-04	-8.664	3.763	2	2
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	166	185	AGAAGATGAGCGATGACGCG	4.9	4.6e-04	-7.675	3.333	3	3
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-163	-144	CATGCATCCGACAGNNNNNN	4.5	6.3e-04	-7.377	3.204	4	4
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-164	-145	NNNNNCTGTCGGATGCATGA	4.4	6.7e-04	-7.313	3.176	5	5
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-731	-712	NNNNNNNNAGGTATGCTTGA	4.0	8.9e-04	-7.025	3.051	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-208	-189	TTTGCATGAAACATGCCAAT	9.5	8.8e-06	-11.640	5.055	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-209	-190	TTGGCATGTTTCATGCAAAC	8.2	3.1e-05	-10.378	4.507	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-154	-135	ATGTCATGTTACATGGCTTT	5.6	2.7e-04	-8.201	3.562	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-153	-134	AAGCCATGTAACATGACATA	5.3	3.4e-04	-7.973	3.462	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1031	-1012	NNNNNNCGACTGAAGCCACA	4.9	4.6e-04	-7.675	3.333	5	5
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-835	-816	GATACAANNNNNNNGCATTT	4.2	7.7e-04	-7.164	3.111	6	6
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1214	-1195	TTGGCATGTGCAAGGGTCGA	3.9	9.5e-04	-6.955	3.021	7	7
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-244	-225	GTAACATATATCTTGCTATA	5.2	3.7e-04	-7.890	3.427	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-243	-224	ATAGCAAGATATATGTTACT	4.0	8.9e-04	-7.025	3.051	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-132	-113	TCGGCCTGTCTCATGCCTTT	10.0	5.3e-06	-12.153	5.278	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-131	-112	AAGGCATGAGACAGGCCGAG	9.9	5.9e-06	-12.049	5.233	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-437	-418	CCGCCAAGATCGAGGCCAGT	6.2	1.7e-04	-8.664	3.763	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-107	-88	AGTGCCATATTCACGCCAAA	6.0	2.0e-04	-8.505	3.694	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-436	-417	CTGGCCTCGATCTTGGCGGG	5.1	4.0e-04	-7.823	3.397	5	5
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	85	104	ACTGCACTCTCCTCGTTACT	4.7	5.4e-04	-7.521	3.266	6	6
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-320	-301	GCAAAATCGGGCAAGCCGGA	4.5	6.3e-04	-7.377	3.204	7	7
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	84	103	GTAACGAGGAGAGTGCAGTT	4.4	6.7e-04	-7.313	3.176	8	8
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	29	48	CCAGCATGGGGCAGGCCGAA	12.1	4.8e-07	-14.555	6.321	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	28	47	TCGGCCTGCCCCATGCTGGA	9.6	8.0e-06	-11.731	5.095	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	53	72	TTGGCATGTCCTATGCCTTT	9.4	9.7e-06	-11.539	5.012	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	54	73	AAGGCATAGGACATGCCAAG	6.8	1.1e-04	-9.155	3.976	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	78	97	AGTGCCATATTCACGCCGAA	6.6	1.2e-04	-8.997	3.907	5	5
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-370	-351	TATACATGGGCCACGTGTCA	5.1	4.0e-04	-7.823	3.397	6	6
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1177	-1158	TAGACATTTTTCAAGCTATT	4.7	5.4e-04	-7.521	3.266	7	7
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-440	-421	GGTGTATGTAACATGTTGTT	3.8	1.0e-03	-6.887	2.991	8	8
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-53	-34	TCGGCATGTCCCATGCCTTT	12.8	1.9e-07	-15.470	6.718	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-52	-33	AAGGCATGGGACATGCCGAG	11.5	9.8e-07	-13.838	6.010	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-78	-59	TCGGCCTGTCCCATGCCGGA	10.3	3.8e-06	-12.472	5.416	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-77	-58	CCGGCATGGGACAGGCCGAA	10.3	3.8e-06	-12.472	5.416	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1159	-1140	ACGGGACGGCCCGTCCCGTT	7.4	6.3e-05	-9.674	4.201	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1160	-1141	ACGGGACGGGCCGTCCCGTC	6.9	9.6e-05	-9.247	4.016	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-28	-9	AGTGCCATATTCACGCCGAA	6.6	1.2e-04	-8.997	3.907	7	7
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-701	-682	AAAGCATGACTCTAGTATGA	6.3	1.6e-04	-8.753	3.801	8	8
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1328	-1309	CCGTCATGTCCCGTCCCGCC	5.9	2.2e-04	-8.434	3.663	9	9
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1327	-1308	GCGGGACGGGACATGACGGG	5.6	2.7e-04	-8.201	3.562	10	10
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1196	-1177	GGAACACGACGCGGGACGGG	5.6	2.7e-04	-8.201	3.562	11	11
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-700	-681	CATACTAGAGTCATGCTTTG	5.6	2.7e-04	-8.201	3.562	12	12
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1204	-1185	GCGTCGTGTTCCGTCCCGTC	5.2	3.7e-04	-7.890	3.427	13	13
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1203	-1184	ACGGGACGGAACACGACGCG	5.1	4.0e-04	-7.823	3.397	14	14
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-91	-72	AGAGCAATATTCACGCCAAA	9.4	9.7e-06	-11.539	5.012	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-116	-97	TCGGCCCGTCCCATGCCTTT	9.1	1.3e-05	-11.233	4.878	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-115	-96	AAGGCATGGGACGGGCCGAG	8.2	3.1e-05	-10.378	4.507	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-90	-71	TTGGCGTGAATATTGCTCTT	5.6	2.7e-04	-8.201	3.562	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-110	-91	ATGGGACGGGCCGAGCAATT	5.3	3.4e-04	-7.973	3.462	5	5
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-111	-92	ATTGCTCGGCCCGTCCCATG	5.0	4.3e-04	-7.741	3.362	6	6
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	46	65	ACAGCTCGAAGCACGCCGCT	10.5	3.1e-06	-12.689	5.511	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	45	64	GCGGCGTGCTTCGAGCTGTT	9.9	5.9e-06	-12.049	5.233	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	2	21	AAGGCATGAAACATCGCAAA	7.1	8.1e-05	-9.416	4.089	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	1	20	TTGCGATGTTTCATGCCTTT	5.5	3.0e-04	-8.117	3.525	4	4
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-241	-222	NNNNNNNNNNNNNNGCCGCT	4.8	5.0e-04	-7.594	3.298	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-242	-223	GCGGCNNNNNNNNNNNNNNN	4.5	6.3e-04	-7.377	3.204	6	6
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-416	-397	GTAGCNNNNNNNNNNNNNNN	4.1	8.2e-04	-7.101	3.084	7	7
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	23	42	TAAGCATGGTGAGAGCCATA	8.6	2.1e-05	-10.751	4.669	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-986	-967	GGAGTATGGTTCATGTCTAA	7.2	7.5e-05	-9.493	4.123	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1482	-1463	GAAGCGTGAGACTAGGCATG	5.5	3.0e-04	-8.117	3.525	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-985	-966	TAGACATGAACCATACTCCA	5.3	3.4e-04	-7.973	3.462	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	22	41	ATGGCTCTCACCATGCTTAT	5.3	3.4e-04	-7.973	3.462	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1465	-1446	TAGGCATGGTTGGTGGAGAA	5.0	4.3e-04	-7.741	3.362	6	6
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-446	-427	ACAGCAACAGGAATGTGATA	4.1	8.2e-04	-7.101	3.084	7	7
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1	18	GNNNNNNNCTTCTTCCCGCG	4.1	8.2e-04	-7.101	3.084	8	8
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1464	-1445	TCTCCACCAACCATGCCTAG	3.9	9.5e-04	-6.955	3.021	9	9
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-891	-872	GAGGCATGGACTATGCATGG	9.9	5.9e-06	-12.049	5.233	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-890	-871	CATGCATAGTCCATGCCTCT	9.8	6.6e-06	-11.935	5.183	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-145	-126	GGTAGACGAAGCATGCCATA	9.5	8.8e-06	-11.640	5.055	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-901	-882	GCAACAAGAACCATGCATAG	7.8	4.5e-05	-10.017	4.350	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-796	-777	ACTGCAATGTGTACGCCTAT	6.4	1.5e-04	-8.834	3.836	5	5
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-146	-127	ATGGCATGCTTCGTCTACCG	6.2	1.7e-04	-8.664	3.763	6	6
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-902	-883	TATGCATGGTTCTTGTTGCG	6.1	1.9e-04	-8.592	3.732	7	7
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-895	-876	CATGGACTATGCATGGTTCT	4.1	8.2e-04	-7.101	3.084	8	8
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-899	-880	GAGGCATGGACTATGCATGG	9.9	5.9e-06	-12.049	5.233	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-898	-879	CATGCATAGTCCATGCCTCT	9.8	6.6e-06	-11.935	5.183	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-145	-126	GGTAGACGAAGCATGCCATC	8.2	3.1e-05	-10.378	4.507	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-909	-890	GCAACAAGAACCATGCATAG	7.8	4.5e-05	-10.017	4.350	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-804	-785	ACTGCAATGTGTACGCCTAT	6.4	1.5e-04	-8.834	3.836	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-146	-127	ATGGCATGCTTCGTCTACCG	6.2	1.7e-04	-8.664	3.763	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-910	-891	TATGCATGGTTCTTGTTGCG	6.1	1.9e-04	-8.592	3.732	7	7
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1158	-1139	ACCGCAAGTTTCATCTCGAT	4.3	7.2e-04	-7.242	3.145	8	8
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-903	-884	CATGGACTATGCATGGTTCT	4.1	8.2e-04	-7.101	3.084	9	9
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-135	-116	CAAGCATGGTGAGAGCCATA	9.9	5.9e-06	-12.049	5.233	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1255	-1236	ATAACAAGAACCATGCCCAG	8.4	2.6e-05	-10.573	4.592	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1397	-1378	GCTGCACAAGTTATGCCAGA	6.7	1.1e-04	-9.072	3.940	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1256	-1237	TGGGCATGGTTCTTGTTATG	6.4	1.5e-04	-8.834	3.836	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1244	-1225	GAAGCATGGGACTGGGCATG	6.2	1.7e-04	-8.664	3.763	5	5
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-136	-117	ATGGCTCTCACCATGCTTGT	6.1	1.9e-04	-8.592	3.732	6	6
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1248	-1229	GAACCATGCCCAGTCCCATG	4.7	5.4e-04	-7.521	3.266	7	7
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-872	-853	GTAACAAGNNNNNNNCGTTA	4.5	6.3e-04	-7.377	3.204	8	8
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1398	-1379	CTGGCATAACTTGTGCAGCG	3.9	9.5e-04	-6.955	3.021	9	9
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-145	-126	CAAGCATGGTGAGAGCCATA	9.9	5.9e-06	-12.049	5.233	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-999	-980	ATAACAAGAACCATGCCCAG	8.4	2.6e-05	-10.573	4.592	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1000	-981	TGGGCATGGTTCTTGTTATG	6.4	1.5e-04	-8.834	3.836	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-988	-969	GAAGCATGGTACTGGGCATG	6.3	1.6e-04	-8.753	3.801	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-146	-127	ATGGCTCTCACCATGCTTGT	6.1	1.9e-04	-8.592	3.732	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1114	-1095	GCTGCACAAGTTATGTCAGA	3.9	9.5e-04	-6.955	3.021	6	6
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-145	-126	CAAGCATGGTGAGAGCCATA	9.9	5.9e-06	-12.049	5.233	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-146	-127	ATGGCTCTCACCATGCTTGT	6.1	1.9e-04	-8.592	3.732	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-871	-852	ACATCAGGATGCATGACCTT	5.1	4.0e-04	-7.823	3.397	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-864	-845	GATGCATGACCTTCTCCATC	4.0	8.9e-04	-7.025	3.051	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-263	-244	GTTGCATGCCCCACGGTGGT	9.9	5.9e-06	-12.049	5.233	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-183	-164	ATTACATGCATCATGCGGGC	9.4	9.7e-06	-11.539	5.012	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-184	-165	CCCGCATGATGCATGTAATG	9.0	1.4e-05	-11.145	4.840	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-180	-161	AAAGCCCGCATGATGCATGT	7.8	4.5e-05	-10.017	4.350	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-264	-245	CCACCGTGGGGCATGCAACA	6.8	1.1e-04	-9.155	3.976	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-143	-124	ATTACATGTATCTTGTCATT	6.7	1.1e-04	-9.072	3.940	6	6
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-179	-160	CATGCATCATGCGGGCTTTC	6.6	1.2e-04	-8.997	3.907	7	7
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-17	2	CCGGCATGAATTTCCCAAGA	5.1	4.0e-04	-7.823	3.397	8	8
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	66	85	CAAGCAATTAACATGGCACC	4.7	5.4e-04	-7.521	3.266	9	9
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-681	-662	GNNNNNNNTTTCACGCTAAA	4.5	6.3e-04	-7.377	3.204	10	10
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-144	-125	ATGACAAGATACATGTAATT	4.5	6.3e-04	-7.377	3.204	11	11
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-803	-784	ATAGCATGACCGATTATGCA	4.0	8.9e-04	-7.025	3.051	12	12
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-270	-251	TACATATGTTGCATGCCCCA	4.0	8.9e-04	-7.025	3.051	13	13
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	108	127	ACTGAATTTGTGATGCTTCA	3.9	9.5e-04	-6.955	3.021	14	14
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-211	-192	ATAACATGGTTCACGCTGGT	9.6	8.0e-06	-11.731	5.095	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-212	-193	CCAGCGTGAACCATGTTATT	9.4	9.7e-06	-11.539	5.012	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-439	-420	CCGGCATGTCCGATCGCTGA	8.8	1.8e-05	-10.941	4.752	3	3
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-172	-153	CAAACATGTAACTTGCCATT	8.1	3.4e-05	-10.287	4.468	4	4
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1037	-1018	CCTGCATGAGTAANNNNNNN	7.3	6.9e-05	-9.587	4.164	5	5
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1036	-1017	NNNNNNTTACTCATGCAGGG	5.4	3.2e-04	-8.048	3.495	6	6
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-586	-567	NNNNNNNNNNNNNNGCCGTT	5.2	3.7e-04	-7.890	3.427	7	7
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-173	-154	ATGGCAAGTTACATGTTTGG	4.8	5.0e-04	-7.594	3.298	8	8
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-438	-419	CAGCGATCGGACATGCCGGA	4.5	6.3e-04	-7.377	3.204	9	9
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1025	-1006	CATGCAGGGGNNNNNNNNNN	4.3	7.2e-04	-7.242	3.145	10	10
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-111	-92	GTTGCANNNNNNNNNNNNNN	4.2	7.7e-04	-7.164	3.111	11	11
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-587	-568	ACGGCNNNNNNNNNNNNNNN	4.0	8.9e-04	-7.025	3.051	12	12
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	91	110	ATTGAATTTGTGATGCTTGA	4.0	8.9e-04	-7.025	3.051	13	13
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-91	-72	GTTGCAATTCTCATGCTTTC	6.6	1.2e-04	-8.997	3.907	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-90	-71	AAAGCATGAGAATTGCAACC	5.2	3.7e-04	-7.890	3.427	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-558	-539	GCAGTATGTTTAATGGCTAA	5.1	4.0e-04	-7.823	3.397	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-894	-875	TCTGAATGGCCAGTGCCAAA	4.1	8.2e-04	-7.101	3.084	4	4
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-44	-25	TAGGCAATTGGCATGCCATG	9.2	1.2e-05	-11.331	4.921	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-43	-24	ATGGCATGCCAATTGCCTAT	7.4	6.3e-05	-9.674	4.201	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-827	-808	CATGCATGATCTGGGGCCGG	5.0	4.3e-04	-7.741	3.362	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-126	-107	GGTGCATGCACATTTTCTTT	3.8	1.0e-03	-6.887	2.991	4	4
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-326	-307	AATACATGTGTCATGCGCGT	9.6	8.0e-06	-11.731	5.095	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-327	-308	CGCGCATGACACATGTATTT	7.2	7.5e-05	-9.493	4.123	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1132	-1113	AAAATATGGAGAATGCTGGA	4.5	6.3e-04	-7.377	3.204	3	3
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-85	-66	TATGCATGGGTCGGGAAGGA	4.5	6.3e-04	-7.377	3.204	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-181	-162	GTAGCAATTAGCATGCTTTT	9.4	9.7e-06	-11.539	5.012	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-322	-303	ATAACATGAAGCACCCGCGA	7.5	5.8e-05	-9.752	4.235	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-180	-161	AAAGCATGCTAATTGCTACC	6.3	1.6e-04	-8.753	3.801	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-226	-207	CATGCATGCATTATTCAGTG	6.2	1.7e-04	-8.664	3.763	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-315	-296	GAAGCACCCGCGATCACCTA	5.1	4.0e-04	-7.823	3.397	5	5
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-225	-206	ACTGAATAATGCATGCATGT	4.8	5.0e-04	-7.594	3.298	6	6
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-663	-644	NNNNNNNNNNNNACGCCTCC	4.5	6.3e-04	-7.377	3.204	7	7
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-662	-643	GAGGCGTNNNNNNNNNNNNN	4.3	7.2e-04	-7.242	3.145	8	8
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	75	94	GTAGCAATTAGCATGCTTTT	9.4	9.7e-06	-11.539	5.012	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-66	-47	ATAACATGAAGCACCCGCGA	7.5	5.8e-05	-9.752	4.235	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	76	95	AAAGCATGCTAATTGCTACC	6.3	1.6e-04	-8.753	3.801	3	3
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	30	49	CATGCATGCATTATTCAGTG	6.2	1.7e-04	-8.664	3.763	4	4
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-59	-40	GAAGCACCCGCGATCACCTA	5.1	4.0e-04	-7.823	3.397	5	5
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	31	50	ACTGAATAATGCATGCATGT	4.8	5.0e-04	-7.594	3.298	6	6
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-905	-886	CAGACATGCTTGATCGCCTA	7.3	6.9e-05	-9.587	4.164	1	1
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1026	-1007	ATAACACGATCATCGCCAAA	5.7	2.6e-04	-8.271	3.592	2	2
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-913	-894	CAAGCATGTCTGATCTGATC	4.2	7.7e-04	-7.164	3.111	3	3
;
; Matrices
;	matrix	name                                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	20	4	1	-33.100	17.200	50.300	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                                      	matches	scored
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	191	100824
;		TOTAL          	191	100824
; Host name	rsat
; Job started	2026-06-17.053930
; Job done	2026-06-17.053942
; Seconds	12.25
;	user	12.25
;	system	0.02
;	cuser	0.1
;	csystem	0.03