; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.062435_gzbqKZ.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 5 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.062435_6xJKaX.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.062435_6xJKaX.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.062435_gzbqKZ.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34242 ; c 0.18661 ; g 0.15145 ; t 0.31953 ; Thresholds lower upper ; pval NA 0.001 ; score 5 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -255 199 . 0 0 0 0 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 site oligos_6-8nt_m10oligos_6-8nt_m10 D -50 -33 CCTTCACCGCTTCCTATA 5.6 3.6e-04 -7.927 3.443 1 1 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -1501 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 site oligos_6-8nt_m10oligos_6-8nt_m10 R -350 -333 GAGTCTCCGACGACCAAC 5.1 5.5e-04 -7.513 3.263 1 1 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -1501 199 . 0 0 0 0 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 site oligos_6-8nt_m10oligos_6-8nt_m10 D 73 90 TCCTCATCGCCCACTCAG 5.5 4.0e-04 -7.835 3.403 1 1 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -1501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m10oligos_6-8nt_m10 D -766 -749 AACCCAAACCCAACCCAG 7.1 9.5e-05 -9.262 4.023 1 1 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m10oligos_6-8nt_m10 D -771 -754 CAGCCAACCCAAACCCAA 5.9 2.8e-04 -8.183 3.554 2 2 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -1501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D 1 18 CGCACTCACCCCAACACA 8.7 1.9e-05 -10.850 4.712 1 1 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D 3 20 CACTCACCCCAACACACC 7.3 7.9e-05 -9.452 4.105 2 2 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -428 -411 AGCACACACCATACTAAA 7.1 9.5e-05 -9.262 4.023 3 3 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -471 -454 AATCCACCCTCAACACCA 6.7 1.4e-04 -8.883 3.858 4 4 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -84 -67 CACACACAGCACACCAAG 6.5 1.7e-04 -8.702 3.779 5 5 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D 139 156 CTCAAACCCACTTCCCTT 6.5 1.7e-04 -8.702 3.779 6 6 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1439 -1422 CCACCACTACCCATCCAT 5.9 2.8e-04 -8.183 3.554 7 7 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -88 -71 CGCACACACACAGCACAC 5.9 2.8e-04 -8.183 3.554 8 8 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1442 -1425 AAACCACCACTACCCATC 5.3 4.6e-04 -7.677 3.334 9 9 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -1501 199 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D 171 188 CTCCCACCAACGATCACC 7.2 8.7e-05 -9.347 4.059 1 1 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D 167 184 GCCTCTCCCACCAACGAT 6.1 2.3e-04 -8.357 3.629 2 2 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D 121 138 ATCACAACCCCTTTCTTT 5.9 2.8e-04 -8.183 3.554 3 3 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D -71 -54 CAGAAACCCCCACNNNNN 5.8 3.1e-04 -8.089 3.513 4 4 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D -65 -48 CCCCCACNNNNNNNNNNN 5.7 3.3e-04 -8.004 3.476 5 5 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m10oligos_6-8nt_m10 D -72 -55 TCAGAAACCCCCACNNNN 5.2 5.1e-04 -7.587 3.295 6 6 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -1501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1498 -1481 NNCCTACCCACACCCTCT 6.1 2.3e-04 -8.357 3.629 1 1 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m10oligos_6-8nt_m10 R 65 82 CCCACACNNNNNNNNNNN 6.1 2.3e-04 -8.357 3.629 2 2 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m10oligos_6-8nt_m10 R -75 -58 GAAACAACCGCTACATAA 6.0 2.6e-04 -8.261 3.588 3 3 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1499 -1482 NNNCCTACCCACACCCTC 5.7 3.3e-04 -8.004 3.476 4 4 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1492 -1475 CCCACACCCTCTTGATCT 5.4 4.3e-04 -7.760 3.370 5 5 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 site oligos_6-8nt_m10oligos_6-8nt_m10 D 53 70 CACCCAAACACTACAACA 5.4 4.3e-04 -7.760 3.370 1 1 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 site oligos_6-8nt_m10oligos_6-8nt_m10 D 160 177 AACACTCCACCGTCGCTC 5.0 6.0e-04 -7.424 3.224 2 2 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site oligos_6-8nt_m10oligos_6-8nt_m10 D -893 -876 CCATCACGACCCTACACC 5.7 3.3e-04 -8.004 3.476 1 1 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site oligos_6-8nt_m10oligos_6-8nt_m10 D -890 -873 TCACGACCCTACACCAAC 5.2 5.1e-04 -7.587 3.295 2 2 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -1501 199 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m10oligos_6-8nt_m10 D -267 -250 CACCGACCCACTAGCAAT 6.7 1.4e-04 -8.883 3.858 1 1 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m10oligos_6-8nt_m10 D -12 5 CTCTCACACCCTAGTTTC 6.5 1.7e-04 -8.702 3.779 2 2 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m10oligos_6-8nt_m10 R -1207 -1190 CGCACACACACTTTCACT 6.2 2.2e-04 -8.435 3.663 3 3 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -1501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m10oligos_6-8nt_m10 D -359 -342 GACCGACCCCCGACGCGA 8.1 3.6e-05 -10.228 4.442 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m10oligos_6-8nt_m10 D -363 -346 ACGAGACCGACCCCCGAC 5.2 5.1e-04 -7.587 3.295 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -1501 199 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 D -643 -626 TACACACCACCCTCCCCA 10.1 4.0e-06 -12.424 5.396 1 1 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 D -636 -619 CACCCTCCCCAAACCCTA 7.9 4.4e-05 -10.037 4.359 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 D -631 -614 TCCCCAAACCCTACTAAG 7.6 5.9e-05 -9.741 4.230 3 3 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 D -640 -623 ACACCACCCTCCCCAAAC 7.0 1.1e-04 -9.159 3.978 4 4 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 R -703 -686 AATAGACCCCCGGCATCC 5.8 3.1e-04 -8.089 3.513 5 5 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 D 90 107 ATGGCACTCCTTACCCCC 5.8 3.1e-04 -8.089 3.513 6 6 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m10oligos_6-8nt_m10 R -665 -648 AACTTTACCCCTACCCTA 5.7 3.3e-04 -8.004 3.476 7 7 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -1501 199 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -1501 199 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site oligos_6-8nt_m10oligos_6-8nt_m10 R -1497 -1480 CGAACACCAACTATCCAA 6.5 1.7e-04 -8.702 3.779 1 1 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site oligos_6-8nt_m10oligos_6-8nt_m10 R -1244 -1227 CGAACACCAACTATCCAA 6.5 1.7e-04 -8.702 3.779 2 2 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site oligos_6-8nt_m10oligos_6-8nt_m10 D -962 -945 ATCTCACGCACTAACAAT 5.8 3.1e-04 -8.089 3.513 3 3 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -1501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 R -389 -372 TACCCAAACGCTACCNNN 6.7 1.4e-04 -8.883 3.858 1 1 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 R -340 -323 NNNNNACTCGCTACCTTA 6.6 1.5e-04 -8.801 3.822 2 2 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 R -378 -361 NNNNNNNNNNCTACCCAA 5.4 4.3e-04 -7.760 3.370 3 3 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 D 104 121 GTTCCACTCCCACGCACT 5.4 4.3e-04 -7.760 3.370 4 4 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 D 106 123 TCCACTCCCACGCACTTA 5.2 5.1e-04 -7.587 3.295 5 5 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m10oligos_6-8nt_m10 D 110 127 CTCCCACGCACTTACCAA 5.0 6.0e-04 -7.424 3.224 6 6 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1467 -1450 GCTTCTCCACCAACCATG 7.6 5.9e-05 -9.741 4.230 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m10oligos_6-8nt_m10 D -876 -859 GCCTCTCCACCTACCAAA 10.4 2.8e-06 -12.798 5.558 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m10oligos_6-8nt_m10 D 5 22 CCAACTCTCTCTACCGCC 7.1 9.5e-05 -9.262 4.023 2 2 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m10oligos_6-8nt_m10 D 12 29 TCTCTACCGCCAACTTCG 5.4 4.3e-04 -7.760 3.370 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m10oligos_6-8nt_m10 D -1104 -1087 CTCACGAACCCTACTGAT 5.3 4.6e-04 -7.677 3.334 4 4 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m10oligos_6-8nt_m10 D -1033 -1016 GGACCACCCTCAGCTCCT 5.2 5.1e-04 -7.587 3.295 5 5 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 D -884 -867 GCCTCTCCACCTACCAAA 10.4 2.8e-06 -12.798 5.558 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 D 5 22 CCAACTCTCTCTACCGCT 6.6 1.5e-04 -8.801 3.822 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 D 11 28 CTCTCTACCGCTAACTTC 5.4 4.3e-04 -7.760 3.370 3 3 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 D -1080 -1063 CTCACGAACCCTACTGAT 5.3 4.6e-04 -7.677 3.334 4 4 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 R -1483 -1466 ATGACACTCCTCGCCATA 5.2 5.1e-04 -7.587 3.295 5 5 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m10oligos_6-8nt_m10 D -1007 -990 GGACCACCCTCAGCTCCT 5.2 5.1e-04 -7.587 3.295 6 6 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m10oligos_6-8nt_m10 D -1222 -1205 CAGTCTCCACCTACCAAG 8.7 1.9e-05 -10.850 4.712 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m10oligos_6-8nt_m10 D 5 22 CCAACACTCTCTACCGTA 8.1 3.6e-05 -10.228 4.442 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m10oligos_6-8nt_m10 D -966 -949 CAGTCTCCACCTACCAAG 8.7 1.9e-05 -10.850 4.712 1 1 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m10oligos_6-8nt_m10 D 5 22 CCAACACTCTCTACCTTA 8.2 3.3e-05 -10.330 4.486 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m10oligos_6-8nt_m10 D -610 -593 AACTCACCACCCAAACCA 6.2 2.2e-04 -8.435 3.663 3 3 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m10oligos_6-8nt_m10 D -608 -591 CTCACCACCCAAACCAAT 5.0 6.0e-04 -7.424 3.224 4 4 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m10oligos_6-8nt_m10 D 5 22 CCAACACTCTCTACCTTA 8.2 3.3e-05 -10.330 4.486 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m10oligos_6-8nt_m10 R -830 -813 CTCTCGCCAGCTTCTACG 5.0 6.0e-04 -7.424 3.224 2 2 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1432 -1415 CAATCTCCCCATCCCGCC 6.4 1.8e-04 -8.622 3.744 1 1 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m10oligos_6-8nt_m10 D -520 -503 CTACCAACCCCGAGTACT 5.8 3.1e-04 -8.089 3.513 2 2 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m10oligos_6-8nt_m10 R -1104 -1087 GCTACACCACCTGCCAGC 10.5 2.4e-06 -12.921 5.611 1 1 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m10oligos_6-8nt_m10 D 156 173 ACTTAAAACCCTACCAAA 5.7 3.3e-04 -8.004 3.476 2 2 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m10oligos_6-8nt_m10 R -1170 -1153 TGCGCAACCCCATTCCCT 5.1 5.5e-04 -7.513 3.263 1 1 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -596 -579 AGTACTCCCCCCACCTCA 11.0 1.3e-06 -13.553 5.886 1 1 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -417 -400 TTCACACACCCCACCTTC 10.5 2.4e-06 -12.921 5.611 2 2 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -699 -682 TCCACTCCCCCACCGTAC 8.6 2.2e-05 -10.745 4.666 3 3 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -434 -417 CTTTCATCCCCTAACGCA 6.6 1.5e-04 -8.801 3.822 4 4 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -600 -583 CTCCCCCCACCTCACTAC 6.2 2.2e-04 -8.435 3.663 5 5 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -697 -680 ACTCCACTCCCCCACCGT 5.8 3.1e-04 -8.089 3.513 6 6 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -421 -404 CACACCCCACCTTCTTTC 5.6 3.6e-04 -7.927 3.443 7 7 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 D -911 -894 ATTCGACCACCCACATAA 5.3 4.6e-04 -7.677 3.334 8 8 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -703 -686 CTCCCCCACCGTACTACC 5.1 5.5e-04 -7.513 3.263 9 9 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 D -1344 -1327 CTATTACCCCCTAAACCT 5.0 6.0e-04 -7.424 3.224 10 10 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m10oligos_6-8nt_m10 R -694 -677 ACAACTCCACTCCCCCAC 5.0 6.0e-04 -7.424 3.224 11 11 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -269 -252 ATAACACCCCCCACCCCA 12.8 1.0e-07 -16.114 6.998 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -262 -245 CCCCCACCCCAAAGCTCA 7.9 4.4e-05 -10.037 4.359 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -315 -298 GAAGCACCCGCGATCACC 7.3 7.9e-05 -9.452 4.105 3 3 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 R -705 -688 CTATCTTCCCCTCCCTCC 6.4 1.8e-04 -8.622 3.744 4 4 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -308 -291 CCGCGATCACCTACCCCT 6.4 1.8e-04 -8.622 3.744 5 5 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -267 -250 AACACCCCCCACCCCAAA 6.3 2.0e-04 -8.533 3.706 6 6 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -272 -255 TCCATAACACCCCCCACC 6.1 2.3e-04 -8.357 3.629 7 7 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -58 -41 TCCTCAACCTCCACTAGA 6.1 2.3e-04 -8.357 3.629 8 8 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 R -690 -673 TCCCCATAGCCCACCCTA 5.3 4.6e-04 -7.677 3.334 9 9 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m10oligos_6-8nt_m10 D -271 -254 CCATAACACCCCCCACCC 5.3 4.6e-04 -7.677 3.334 10 10 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -13 4 ATAACACCCCCCACCCCA 12.8 1.0e-07 -16.114 6.998 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -6 11 CCCCCACCCCAAAGCTCA 7.9 4.4e-05 -10.037 4.359 2 2 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -59 -42 GAAGCACCCGCGATCACC 7.3 7.9e-05 -9.452 4.105 3 3 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -52 -35 CCGCGATCACCTACCCCT 6.4 1.8e-04 -8.622 3.744 4 4 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -11 6 AACACCCCCCACCCCAAA 6.3 2.0e-04 -8.533 3.706 5 5 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -16 1 TCCATAACACCCCCCACC 6.1 2.3e-04 -8.357 3.629 6 6 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m10oligos_6-8nt_m10 D -15 2 CCATAACACCCCCCACCC 5.3 4.6e-04 -7.677 3.334 7 7 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m10oligos_6-8nt_m10 18 4 1 -22.600 17.300 39.900 a:0.342 c:0.187 g:0.151 t:0.320 ; Number of sequences scanned 32 ; Sum of sequence lengths 51020 ; N residues 10767 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m10oligos_6-8nt_m10 103 100952 ; TOTAL 103 100952 ; Host name rsat ; Job started 2026-06-17.062435 ; Job done 2026-06-17.062446 ; Seconds 10.83 ; user 10.83 ; system 0.01 ; cuser 0.11 ; csystem 0.01