; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.025502_jogqZH.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.025502_SSO9bT.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.025502_SSO9bT.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.025502_jogqZH.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33779 ; c 0.20939 ; g 0.14334 ; t 0.30948 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -255 199 . 0 0 0 0 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -137 -126 AATCATGCCTTT 9.3 1.2e-05 -11.300 4.907 1 1 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -501 199 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 site oligos_6-8nt_m2oligos_6-8nt_m2 D -52 -41 AATCATCCCCGG 4.8 8.4e-04 -7.076 3.073 1 1 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -501 199 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m2oligos_6-8nt_m2 D -121 -110 TTTCATGCCACT 9.1 2.0e-05 -10.822 4.700 1 1 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m2oligos_6-8nt_m2 D -77 -66 AGTCATTCCGAT 5.7 3.3e-04 -8.003 3.476 2 2 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 site oligos_6-8nt_m2oligos_6-8nt_m2 R -475 -464 ATACATGACTAG 4.7 9.3e-04 -6.980 3.031 3 3 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -501 199 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -106 -95 ATTCATGCCTTT 9.4 9.8e-06 -11.538 5.011 1 1 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -61 -50 AAGCATGCCGCT 8.5 4.9e-05 -9.934 4.314 2 2 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -377 -366 GATCATTCCATT 6.3 2.0e-04 -8.505 3.693 3 3 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -501 199 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m2oligos_6-8nt_m2 D 161 172 AATGATGCCTCT 5.3 5.0e-04 -7.610 3.305 1 1 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -501 199 . 0 0 0 0 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 site oligos_6-8nt_m2oligos_6-8nt_m2 R -321 -310 TATCATGNNNNN 6.0 2.5e-04 -8.279 3.596 1 1 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -501 199 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m2oligos_6-8nt_m2 R -312 -301 ATTCATGCAGAT 5.0 6.9e-04 -7.278 3.161 1 1 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m2oligos_6-8nt_m2 R -419 -408 AATCAAGCCATC 4.8 8.4e-04 -7.076 3.073 2 2 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -501 199 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -501 199 . 0 0 0 0 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site oligos_6-8nt_m2oligos_6-8nt_m2 D -200 -189 AAACATGCCAAT 8.8 3.2e-05 -10.348 4.494 1 1 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site oligos_6-8nt_m2oligos_6-8nt_m2 D -145 -134 TAACATGACATA 5.0 6.9e-04 -7.278 3.161 2 2 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 site oligos_6-8nt_m2oligos_6-8nt_m2 R -154 -143 TTACATGGCTTT 4.7 9.3e-04 -6.980 3.031 3 3 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -501 199 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m2oligos_6-8nt_m2 D 25 36 AAACATCCCATA 5.7 3.3e-04 -8.003 3.476 1 1 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m2oligos_6-8nt_m2 R 9 20 GATCAAGCCTTG 4.9 7.6e-04 -7.181 3.119 2 2 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -501 199 . 0 0 0 0 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m2oligos_6-8nt_m2 R -132 -121 TCTCATGCCTTT 8.6 4.3e-05 -10.065 4.371 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m2oligos_6-8nt_m2 R -107 -96 ATTCACGCCAAA 6.8 1.6e-04 -8.754 3.802 2 2 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 site oligos_6-8nt_m2oligos_6-8nt_m2 D -123 -112 AGACAGGCCGAG 5.1 6.2e-04 -7.389 3.209 3 3 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -501 199 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m2oligos_6-8nt_m2 D 62 73 GGACATGCCAAG 8.0 7.9e-05 -9.441 4.100 1 1 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m2oligos_6-8nt_m2 R 78 89 ATTCACGCCGAA 7.0 1.5e-04 -8.839 3.839 2 2 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m2oligos_6-8nt_m2 D 180 191 ATTCATCCCAAG 5.9 2.7e-04 -8.204 3.563 3 3 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -501 199 . 0 0 0 0 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m2oligos_6-8nt_m2 D -44 -33 GGACATGCCGAG 8.3 6.0e-05 -9.721 4.222 1 1 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m2oligos_6-8nt_m2 R -53 -42 TCCCATGCCTTT 7.8 9.5e-05 -9.264 4.023 2 2 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m2oligos_6-8nt_m2 R -78 -67 TCCCATGCCGGA 7.5 1.2e-04 -9.070 3.939 3 3 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m2oligos_6-8nt_m2 R -28 -17 ATTCACGCCGAA 7.0 1.5e-04 -8.839 3.839 4 4 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 site oligos_6-8nt_m2oligos_6-8nt_m2 D 83 94 ATTCATCCCAAG 5.9 2.7e-04 -8.204 3.563 5 5 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -501 199 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site oligos_6-8nt_m2oligos_6-8nt_m2 R -116 -105 TCCCATGCCTTT 7.8 9.5e-05 -9.264 4.023 1 1 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 site oligos_6-8nt_m2oligos_6-8nt_m2 R -91 -80 ATTCACGCCAAA 6.8 1.6e-04 -8.754 3.802 2 2 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -501 199 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m2oligos_6-8nt_m2 R 1 12 TTTCATGCCTTT 8.9 2.6e-05 -10.553 4.583 1 1 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m2oligos_6-8nt_m2 D 54 65 AAGCACGCCGCT 6.5 1.8e-04 -8.611 3.740 2 2 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m2oligos_6-8nt_m2 D -233 -222 NNNNNNGCCGCT 5.0 6.9e-04 -7.278 3.161 3 3 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 site oligos_6-8nt_m2oligos_6-8nt_m2 R -425 -414 TACCTTGCCAAA 4.7 9.3e-04 -6.980 3.031 4 4 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -23.000 10.800 33.800 a:0.338 c:0.209 g:0.143 t:0.309 ; Number of sequences scanned 17 ; Sum of sequence lengths 11671 ; N residues 2211 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 34 22968 ; TOTAL 34 22968 ; Host name rsat ; Job started 2026-06-17.025503 ; Job done 2026-06-17.025505 ; Seconds 2.15 ; user 2.15 ; system 0.02 ; cuser 0.08 ; csystem 0.04