; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.025853_MU7wpm.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.025853_2EyU20.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.025853_2EyU20.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.025853_MU7wpm.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.35356 ; c 0.20630 ; g 0.15199 ; t 0.28815 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -501 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -501 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -300 -289 AAACATGCCAGT 9.0 2.1e-05 -10.773 4.679 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -126 AAGCATGCCATA 8.9 2.6e-05 -10.548 4.581 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -295 -284 AAACATGCCAGT 9.0 2.1e-05 -10.773 4.679 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -126 AAGCATGCCATC 8.1 7.4e-05 -9.506 4.128 2 2 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -501 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -501 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -97 TGTCATTCCTTT 5.2 5.8e-04 -7.453 3.237 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -501 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -97 TGTCATTCCTTT 5.2 5.8e-04 -7.453 3.237 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -501 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -18 -7 ATTCATGCCGGG 8.9 2.6e-05 -10.548 4.581 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -316 -305 ATTCATCCCATT 6.9 1.6e-04 -8.754 3.802 2 2 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 D -262 -251 TTGCATGCCCCA 6.1 2.4e-04 -8.324 3.615 3 3 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -98 -87 TAACTTGCCTTA 5.3 5.1e-04 -7.575 3.290 4 4 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -430 -419 GGACATGCCGGA 7.4 1.3e-04 -8.984 3.902 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -164 -153 TAACTTGCCATT 6.4 2.0e-04 -8.517 3.699 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -501 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -19 -8 AATCATACCAGA 5.3 5.1e-04 -7.575 3.290 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -179 -168 AAGCATGCTAAT 4.9 7.8e-04 -7.159 3.109 2 2 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 D 77 88 AAGCATGCTAAT 4.9 7.8e-04 -7.159 3.109 1 1 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -23.100 11.000 34.100 a:0.354 c:0.206 g:0.152 t:0.288 ; Number of sequences scanned 11 ; Sum of sequence lengths 7443 ; N residues 1059 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 15 14644 ; TOTAL 15 14644 ; Host name rsat ; Job started 2026-06-17.025854 ; Job done 2026-06-17.025855 ; Seconds 1.52 ; user 1.53 ; system 0.02 ; cuser 0.11 ; csystem 0.02