; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.030713_PUsXLB.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.030713_ECQFxB.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.030713_ECQFxB.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.030713_PUsXLB.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.30629 ; c 0.19470 ; g 0.17228 ; t 0.32673 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0940.1.AP1 D -1776 -1764 ACATAAATGGAGA 9.0 1.4e-05 -11.174 4.853 1 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA2637.1.FUL::AG::SEP3 R -1574 -1559 AGGCCATAGATAGAAA 9.0 1.6e-05 -11.030 4.790 2 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0558.1.FLC D -623 -603 AAATTGCGTAAAAAGAAAGAA 9.0 1.9e-05 -10.897 4.732 3 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0559.1.PI R -272 -259 ACAGAAGAAGAAGA 8.7 2.6e-05 -10.544 4.579 4 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0558.1.FLC R -1577 -1557 CCAGGCCATAGATAGAAAGAT 8.3 3.5e-05 -10.247 4.450 5 2 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0558.2.FLC R -1575 -1562 CCATAGATAGAAAG 8.3 3.9e-05 -10.164 4.414 6 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA2635.1.FUL R -1574 -1559 AGGCCATAGATAGAAA 7.9 3.9e-05 -10.160 4.413 7 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0584.2.SEP1 D -678 -666 CCAATACTAGCAA 8.4 4.0e-05 -10.127 4.398 8 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0555.1.SVP R -1577 -1558 CAGGCCATAGATAGAAAGAT 7.8 4.6e-05 -9.996 4.341 9 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA0558.2.FLC D -618 -605 GCGTAAAAAGAAAG 8.1 4.7e-05 -9.969 4.329 10 2 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA1205.1.AGL6 D -621 -603 ATTGCGTAAAAAGAAAGAA 7.0 5.6e-05 -9.783 4.249 11 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA2731.1.sep3 D -621 -601 ATTGCGTAAAAAGAAAGAAAA 5.6 6.6e-05 -9.622 4.179 12 1 PmRDR1_Pmu.4_1G399230-v1.0.a1::Pmu4_1:4996340-4998340(+) site MA2639.1.FUL::SOC1 R -1776 -1765 CTCCATTTATGT 7.3 9.7e-05 -9.240 4.013 13 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0559.1.PI R -1564 -1551 CCAAAAAAAGAAAA 11.2 1.2e-06 -13.637 5.922 1 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0555.1.SVP R -1566 -1547 AAATCCAAAAAAAGAAAAAA 11.0 2.3e-06 -12.984 5.639 2 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0556.1.AP3 R -1563 -1549 ATCCAAAAAAAGAAA 10.7 2.5e-06 -12.916 5.609 3 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0940.1.AP1 R -1563 -1551 CCAAAAAAAGAAA 10.1 2.5e-06 -12.892 5.599 4 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0558.1.FLC R -1566 -1546 AAAATCCAAAAAAAGAAAAAA 10.7 2.9e-06 -12.743 5.534 5 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0554.1.SOC1 D -1565 -1551 TTTTTCTTTTTTTGG 10.6 3.0e-06 -12.706 5.518 6 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1205.1.AGL6 R -1566 -1548 AATCCAAAAAAAGAAAAAA 10.8 3.1e-06 -12.675 5.504 7 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0548.1.AGL15 D -1563 -1549 TTTCTTTTTTTGGAT 10.3 3.3e-06 -12.609 5.476 8 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0555.2.SVP R -1563 -1548 AATCCAAAAAAAGAAA 10.5 4.0e-06 -12.433 5.400 9 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0554.2.SOC1 D -1563 -1551 TTTCTTTTTTTGG 10.4 4.0e-06 -12.417 5.393 10 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0556.2.AP3 R -1563 -1551 CCAAAAAAAGAAA 10.2 4.6e-06 -12.282 5.334 11 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0558.2.FLC R -1564 -1551 CCAAAAAAAGAAAA 10.2 5.4e-06 -12.133 5.269 12 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.1.AGL3 D -51 -42 CTATATATAG 9.2 7.1e-06 -11.856 5.149 13 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.1.AGL3 R -51 -42 CTATATATAG 9.2 7.1e-06 -11.856 5.149 14 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1204.1.AGL13 R -1565 -1548 AATCCAAAAAAAGAAAAA 9.4 9.3e-06 -11.589 5.033 15 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.3.AGL3 D -51 -42 CTATATATAG 9.1 1.4e-05 -11.185 4.858 16 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.3.AGL3 R -51 -42 CTATATATAG 9.1 1.4e-05 -11.185 4.858 17 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2637.1.FUL::AG::SEP3 R -1563 -1548 AATCCAAAAAAAGAAA 9.0 1.6e-05 -11.030 4.790 18 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1012.1.AGL27 D -1564 -1551 TTTTCTTTTTTTGG 9.2 1.7e-05 -10.964 4.762 19 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2635.1.FUL R -1563 -1548 AATCCAAAAAAAGAAA 8.5 2.4e-05 -10.651 4.625 20 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1203.1.AGL63 R -1563 -1549 ATCCAAAAAAAGAAA 8.5 2.4e-05 -10.631 4.617 21 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0082.2.squamosa R -1563 -1551 CCAAAAAAAGAAA 8.6 2.4e-05 -10.626 4.615 22 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0563.1.SEP3 D -1561 -1551 TCTTTTTTTGG 8.4 2.9e-05 -10.448 4.537 23 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0940.1.AP1 D -1424 -1412 ATAAATAAAGAAA 8.4 3.0e-05 -10.409 4.521 24 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0548.3.AGL15 D -1563 -1548 TTTCTTTTTTTGGATT 8.2 3.3e-05 -10.331 4.487 25 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1814.1.RIN D -1562 -1548 TTCTTTTTTTGGATT 8.3 3.4e-05 -10.304 4.475 26 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1199.1.AGL16 D -1563 -1549 TTTCTTTTTTTGGAT 8.2 3.9e-05 -10.159 4.412 27 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0563.2.SEP3 D -1560 -1551 CTTTTTTTGG 8.2 3.9e-05 -10.144 4.405 28 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0082.1.squamosa R -1564 -1551 CCAAAAAAAGAAAA 8.2 4.1e-05 -10.109 4.390 29 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2639.1.FUL::SOC1 D -1562 -1551 TTCTTTTTTTGG 8.1 4.3e-05 -10.046 4.363 30 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2731.1.sep3 R -1374 -1354 TTAACCCAAAAAAAAAAAAAA 6.2 4.7e-05 -9.966 4.328 31 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA1814.2.RIN D -1560 -1551 CTTTTTTTGG 8.2 4.9e-05 -9.932 4.313 32 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2731.1.sep3 R -1567 -1547 AAATCCAAAAAAAGAAAAAAC 6.1 5.0e-05 -9.913 4.305 33 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0548.2.AGL15 D -1564 -1546 TTTTCTTTTTTTGGATTTT 7.2 5.9e-05 -9.742 4.231 34 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2731.1.sep3 R -1375 -1355 TAACCCAAAAAAAAAAAAAAA 5.6 6.6e-05 -9.622 4.179 35 3 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2637.1.FUL::AG::SEP3 D -638 -623 GTTCTAAAAACAGATA 7.5 6.7e-05 -9.612 4.175 36 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.2.AGL3 R -55 -38 GCCACTATATATAGGAGA 7.7 7.2e-05 -9.539 4.143 37 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0001.2.AGL3 D -639 -622 CGTTCTAAAAACAGATAA 7.6 7.8e-05 -9.455 4.106 38 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0584.2.SEP1 R -1563 -1551 CCAAAAAAAGAAA 7.6 8.9e-05 -9.327 4.051 39 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2638.1.FUL::SEP3 D -54 -39 CTCCTATATATAGTGG 6.4 8.9e-05 -9.324 4.050 40 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA0082.2.squamosa D -1424 -1412 ATAAATAAAGAAA 7.5 9.2e-05 -9.295 4.037 41 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2638.1.FUL::SEP3 R -54 -39 CCACTATATATAGGAG 6.3 9.5e-05 -9.257 4.020 42 2 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2636.1.FUL::AG D -1565 -1548 TTTTTCTTTTTTTGGATT 6.4 1.0e-04 -9.180 3.987 43 1 PmRDR1_Pmu.4_1G399250-v1.0.a1::Pmu4_1:5013718-5015718(+) site MA2635.1.FUL D -638 -623 GTTCTAAAAACAGATA 6.6 1.0e-04 -9.171 3.983 44 2 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0563.1.SEP3 R -1846 -1836 GCCTTTTTTGG 9.5 5.9e-06 -12.045 5.231 1 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0563.2.SEP3 R -1846 -1837 CCTTTTTTGG 9.4 8.0e-06 -11.738 5.098 2 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0559.1.PI R -105 -92 AAAAAAGAAGAAAA 8.2 4.3e-05 -10.051 4.365 3 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA2639.1.FUL::SOC1 R -1846 -1835 AGCCTTTTTTGG 7.9 5.3e-05 -9.842 4.274 4 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0584.2.SEP1 R -242 -230 CTATATGTAGAAA 8.1 5.5e-05 -9.804 4.258 5 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA2638.1.FUL::SEP3 D -242 -227 TTTCTACATATAGTGG 7.0 5.9e-05 -9.734 4.228 6 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA2638.1.FUL::SEP3 R -242 -227 CCACTATATGTAGAAA 6.8 6.8e-05 -9.593 4.166 7 2 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0556.2.AP3 R -242 -230 CTATATGTAGAAA 7.8 6.8e-05 -9.590 4.165 8 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0559.1.PI D -1898 -1885 GCAGAAGAAGAAAT 7.6 7.5e-05 -9.501 4.126 9 2 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0940.1.AP1 R -242 -230 CTATATGTAGAAA 7.4 9.1e-05 -9.304 4.041 10 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0556.1.AP3 R -242 -228 CACTATATGTAGAAA 7.3 1.0e-04 -9.203 3.997 11 1 PmRDR1_Pmu.4_1G399280-v1.0.a1::Pmu4_1:5029901-5031901(+) site MA0005.2.AG D -818 -801 CTTACCTTAGTGAGCAAG 7.2 1.0e-04 -9.165 3.980 12 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0940.1.AP1 R -287 -275 ACATATAGGGAAA 8.9 1.6e-05 -11.059 4.803 1 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0555.1.SVP R -290 -271 CTATACATATAGGGAAAACA 9.0 1.7e-05 -11.007 4.780 2 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0555.2.SVP R -287 -272 TATACATATAGGGAAA 8.5 2.8e-05 -10.472 4.548 3 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0548.1.AGL15 D -287 -273 TTTCCCTATATGTAT 8.4 3.4e-05 -10.276 4.463 4 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0082.2.squamosa R -287 -275 ACATATAGGGAAA 8.1 4.6e-05 -9.993 4.340 5 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA2636.1.FUL::AG R -287 -270 ACTATACATATAGGGAAA 7.5 4.6e-05 -9.984 4.336 6 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0559.1.PI R -863 -850 CAAAAAGGGGAAGG 8.0 5.3e-05 -9.850 4.278 7 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0556.1.AP3 R -287 -273 ATACATATAGGGAAA 7.8 6.6e-05 -9.619 4.178 8 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0558.1.FLC R -290 -270 ACTATACATATAGGGAAAACA 7.5 7.0e-05 -9.561 4.152 9 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0082.1.squamosa R -288 -275 ACATATAGGGAAAA 7.7 7.3e-05 -9.519 4.134 10 1 PmRDR1_Pmu.1_1G056020-v1.0.a1::Pmu1_1:30799035-30801035(+) site MA0548.2.AGL15 D -288 -270 TTTTCCCTATATGTATAGT 6.8 7.6e-05 -9.483 4.119 11 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0558.2.FLC R -1802 -1789 CTCAAAATGGAAGG 9.5 1.1e-05 -11.379 4.942 1 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0559.1.PI R -515 -502 CGAAAAGGGGAAGG 9.4 1.3e-05 -11.281 4.899 2 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA1012.1.AGL27 D -1802 -1789 CCTTCCATTTTGAG 8.7 2.6e-05 -10.561 4.587 3 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA1814.2.RIN D -1896 -1887 CTATTTTTGT 8.6 3.1e-05 -10.371 4.504 4 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0940.1.AP1 R -286 -274 ATATATAGGGAAA 8.2 3.8e-05 -10.179 4.421 5 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA1814.1.RIN D -1898 -1884 AGCTATTTTTGTAGA 8.0 4.7e-05 -9.970 4.330 6 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0556.2.AP3 R -1801 -1789 CTCAAAATGGAAG 7.9 6.3e-05 -9.676 4.202 7 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA1814.1.RIN R -1451 -1437 GAGTATTTTAGGGTA 7.4 8.3e-05 -9.395 4.080 8 2 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0559.1.PI R -1802 -1789 CTCAAAATGGAAGG 7.4 8.8e-05 -9.339 4.056 9 2 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0558.1.FLC R -1804 -1784 CTCCCCTCAAAATGGAAGGAT 7.0 1.0e-04 -9.170 3.982 10 1 PmRDR1_Pmu.1_1G055810-v1.0.a1::Pmu1_1:30671661-30673661(-) site MA0555.1.SVP R -289 -270 CTATATATATAGGGAAAACA 6.7 1.0e-04 -9.168 3.982 11 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0584.2.SEP1 R -1898 -1886 CCATAACTGGAAA 10.0 4.7e-06 -12.269 5.328 1 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2635.1.FUL R -283 -268 TATATATATATAGGAA 8.7 2.0e-05 -10.813 4.696 2 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0556.2.AP3 R -1898 -1886 CCATAACTGGAAA 9.0 2.1e-05 -10.776 4.680 3 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0005.1.AG D -1262 -1252 CCAAATTTGGC 8.4 2.2e-05 -10.720 4.656 4 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2637.1.FUL::AG::SEP3 R -283 -268 TATATATATATAGGAA 8.3 3.2e-05 -10.347 4.494 5 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0548.1.AGL15 D -1898 -1884 TTTCCAGTTATGGGG 8.4 3.4e-05 -10.276 4.463 6 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0558.1.FLC R -925 -905 AGTAGGCTAAAAAAGTAAGAA 8.3 3.5e-05 -10.247 4.450 7 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2638.1.FUL::SEP3 R -283 -268 TATATATATATAGGAA 7.6 3.8e-05 -10.173 4.418 8 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0082.2.squamosa R -1898 -1886 CCATAACTGGAAA 8.2 4.0e-05 -10.127 4.398 9 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0005.1.AG R -1263 -1253 CCAAATTTGGA 8.0 4.8e-05 -9.947 4.320 10 2 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2638.1.FUL::SEP3 D -283 -268 TTCCTATATATATATA 7.2 5.1e-05 -9.874 4.288 11 2 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0559.1.PI D -1508 -1495 AAAAAAAAAGAAAG 8.0 5.3e-05 -9.850 4.278 12 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0082.1.squamosa R -1899 -1886 CCATAACTGGAAAA 7.8 6.5e-05 -9.635 4.185 13 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2639.1.FUL::SOC1 D -1897 -1886 TTCCAGTTATGG 7.6 7.0e-05 -9.562 4.153 14 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0558.1.FLC R -63 -43 AATATATAATAGTAGAAACTA 7.5 7.0e-05 -9.561 4.152 15 2 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0585.2.AGL1 R -498 -483 TTGCCATGATGGGGAA 7.7 7.1e-05 -9.554 4.149 16 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0556.1.AP3 R -1898 -1884 CCCCATAACTGGAAA 7.7 7.3e-05 -9.530 4.139 17 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0558.1.FLC D -1942 -1922 ATTCGATCAAAAAAGAAAAAG 7.4 7.6e-05 -9.489 4.121 18 3 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA1205.1.AGL6 R -925 -907 TAGGCTAAAAAAGTAAGAA 6.5 7.7e-05 -9.472 4.113 19 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2636.1.FUL::AG R -1675 -1658 ACTTGTCATATCTGGAAT 6.8 7.8e-05 -9.459 4.108 20 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0585.1.AGL1 R -499 -482 ATTGCCATGATGGGGAAT 7.5 8.5e-05 -9.373 4.070 21 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA1814.1.RIN D -1786 -1772 CTATATTTTAGGGTC 7.3 9.1e-05 -9.302 4.040 22 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0558.2.FLC D -1937 -1924 ATCAAAAAAGAAAA 7.3 9.1e-05 -9.301 4.039 23 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0082.2.squamosa R -283 -271 ATATATATAGGAA 7.5 9.2e-05 -9.295 4.037 24 2 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA1203.1.AGL63 D -1674 -1660 TTCCAGATATGACAA 6.7 9.2e-05 -9.292 4.035 25 1 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA2635.1.FUL D -283 -268 TTCCTATATATATATA 6.7 9.8e-05 -9.236 4.011 26 2 PmRDR1_Pmu.1_1G018060-v1.0.a1::Pmu1_1:10122459-10124459(+) site MA0584.1.SEP1 R -1899 -1882 AGCCCCATAACTGGAAAA 7.3 1.0e-04 -9.167 3.981 27 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) limit START_END D -2000 -1 . 0 0 0 0 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.3.AGL3 R -1179 -1170 CCAAATATAG 9.9 3.2e-06 -12.656 5.496 1 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1814.2.RIN D -403 -394 CTATTTTTGG 10.9 3.6e-06 -12.533 5.443 2 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1814.1.RIN D -405 -391 CTCTATTTTTGGATG 10.1 3.8e-06 -12.478 5.419 3 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.1.AGL3 R -1179 -1170 CCAAATATAG 9.7 4.8e-06 -12.250 5.320 4 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1204.1.AGL13 R -1646 -1629 ATTCTCAAAAAAGAAAAA 10.2 5.1e-06 -12.183 5.291 5 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0584.2.SEP1 R -1182 -1170 CCAAATATAGTAG 9.9 5.3e-06 -12.156 5.279 6 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1814.2.RIN D -1179 -1170 CTATATTTGG 9.4 5.3e-06 -12.151 5.277 7 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0082.2.squamosa R -1182 -1170 CCAAATATAGTAG 9.5 5.7e-06 -12.078 5.245 8 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1205.1.AGL6 R -1647 -1629 ATTCTCAAAAAAGAAAAAA 10.1 5.8e-06 -12.052 5.234 9 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1814.1.RIN D -1181 -1167 TACTATATTTGGAGT 9.6 6.8e-06 -11.895 5.166 10 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0940.1.AP1 R -406 -394 CCAAAAATAGAGA 9.5 6.9e-06 -11.880 5.160 11 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0082.1.squamosa R -1183 -1170 CCAAATATAGTAGA 9.3 8.6e-06 -11.665 5.066 12 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0548.1.AGL15 D -406 -392 TCTCTATTTTTGGAT 9.5 9.8e-06 -11.529 5.007 13 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.2.AGL3 R -1183 -1166 CACTCCAAATATAGTAGA 9.5 9.9e-06 -11.520 5.003 14 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0563.1.SEP3 D -404 -394 TCTATTTTTGG 9.2 1.0e-05 -11.476 4.984 15 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.1.AGL3 R -403 -394 CCAAAAATAG 9.1 1.2e-05 -11.343 4.926 16 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0558.1.FLC R -1647 -1627 GCATTCTCAAAAAAGAAAAAA 9.4 1.2e-05 -11.295 4.905 17 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2639.1.FUL::SOC1 D -405 -394 CTCTATTTTTGG 9.3 1.2e-05 -11.294 4.905 18 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0548.3.AGL15 D -1644 -1629 TTTCTTTTTTGAGAAT 9.4 1.3e-05 -11.280 4.899 19 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.1.AP3 R -406 -392 ATCCAAAAATAGAGA 9.4 1.3e-05 -11.240 4.882 20 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2637.1.FUL::AG::SEP3 R -406 -391 CATCCAAAAATAGAGA 9.2 1.3e-05 -11.219 4.872 21 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0563.2.SEP3 D -403 -394 CTATTTTTGG 9.0 1.5e-05 -11.123 4.830 22 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2639.1.FUL::SOC1 D -1181 -1170 TACTATATTTGG 9.1 1.6e-05 -11.064 4.805 23 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0548.2.AGL15 D -1645 -1627 TTTTCTTTTTTGAGAATGC 8.7 2.0e-05 -10.806 4.693 24 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2731.1.sep3 R -1649 -1629 ATTCTCAAAAAAGAAAAAAGA 7.4 2.2e-05 -10.706 4.650 25 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.2.AP3 R -406 -394 CCAAAAATAGAGA 8.9 2.3e-05 -10.661 4.630 26 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0555.1.SVP R -1647 -1628 CATTCTCAAAAAAGAAAAAA 8.6 2.4e-05 -10.651 4.626 27 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2635.1.FUL R -406 -391 CATCCAAAAATAGAGA 8.5 2.4e-05 -10.651 4.625 28 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0558.2.FLC R -1645 -1632 CTCAAAAAAGAAAA 8.8 2.4e-05 -10.633 4.618 29 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1199.1.AGL16 D -1644 -1630 TTTCTTTTTTGAGAA 8.7 2.6e-05 -10.565 4.588 30 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.3.AGL3 R -403 -394 CCAAAAATAG 8.7 2.6e-05 -10.556 4.585 31 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0558.2.FLC R -407 -394 CCAAAAATAGAGAC 8.6 2.9e-05 -10.435 4.532 32 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.1.AP3 R -1644 -1630 TTCTCAAAAAAGAAA 8.4 3.8e-05 -10.178 4.420 33 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0559.1.PI R -407 -394 CCAAAAATAGAGAC 8.3 3.9e-05 -10.149 4.408 34 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0584.1.SEP1 R -1183 -1166 CACTCCAAATATAGTAGA 8.3 4.1e-05 -10.096 4.385 35 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1012.1.AGL27 D -1645 -1632 TTTTCTTTTTTGAG 7.9 4.6e-05 -9.994 4.341 36 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0558.1.FLC R -409 -389 CTCATCCAAAAATAGAGACAA 7.9 5.0e-05 -9.900 4.300 37 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0555.2.SVP R -1644 -1629 ATTCTCAAAAAAGAAA 7.8 5.1e-05 -9.874 4.288 38 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0555.2.SVP R -406 -391 CATCCAAAAATAGAGA 7.8 5.1e-05 -9.874 4.288 39 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0559.1.PI R -1645 -1632 CTCAAAAAAGAAAA 8.0 5.3e-05 -9.850 4.278 40 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0563.2.SEP3 D -1179 -1170 CTATATTTGG 7.9 5.5e-05 -9.805 4.258 41 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2637.1.FUL::AG::SEP3 R -1182 -1167 ACTCCAAATATAGTAG 7.7 5.6e-05 -9.787 4.250 42 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2635.1.FUL R -1182 -1167 ACTCCAAATATAGTAG 7.4 5.7e-05 -9.769 4.243 43 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0555.1.SVP R -409 -390 TCATCCAAAAATAGAGACAA 7.3 6.7e-05 -9.617 4.177 44 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.2.AP3 R -1644 -1632 CTCAAAAAAGAAA 7.8 6.8e-05 -9.590 4.165 45 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0548.1.AGL15 D -1644 -1630 TTTCTTTTTTGAGAA 7.7 7.0e-05 -9.568 4.155 46 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.2.AP3 R -1182 -1170 CCAAATATAGTAG 7.7 7.6e-05 -9.491 4.122 47 3 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0554.1.SOC1 D -1646 -1632 TTTTTCTTTTTTGAG 7.5 8.2e-05 -9.404 4.084 48 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0940.1.AP1 D -13 -1 CCAAAATAAGAGA 7.5 8.3e-05 -9.394 4.080 49 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA2636.1.FUL::AG D -1428 -1411 CCTTTTCTTTTCTGGTAA 6.7 8.4e-05 -9.387 4.077 50 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0556.1.AP3 R -1182 -1168 CTCCAAATATAGTAG 7.5 8.6e-05 -9.358 4.064 51 3 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0001.2.AGL3 D -64 -47 GGAGCCAATTACAGGAAA 7.5 8.7e-05 -9.353 4.062 52 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0554.2.SOC1 D -1644 -1632 TTTCTTTTTTGAG 7.4 9.2e-05 -9.293 4.036 53 1 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA1012.1.AGL27 D -407 -394 GTCTCTATTTTTGG 6.8 9.4e-05 -9.274 4.028 54 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0548.3.AGL15 D -1426 -1411 TTTTCTTTTCTGGTAA 6.6 9.5e-05 -9.258 4.021 55 2 PmRDR1_Pmu.1_1G056030-v1.0.a1::Pmu1_1:30805544-30807544(+) site MA0940.1.AP1 R -757 -745 CTAAATAGAGAGA 7.3 1.0e-04 -9.201 3.996 56 3 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) limit START_END D -2000 -1 . 0 0 0 0 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0005.2.AG R -911 -894 ATTACCAAAATGTGAAAT 9.0 1.9e-05 -10.869 4.720 1 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2635.1.FUL D -1680 -1665 GTTATATATATAGATA 8.7 2.0e-05 -10.813 4.696 2 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA1205.1.AGL6 D -656 -638 AAACCTTAAAAAGTAAATA 8.4 2.2e-05 -10.734 4.662 3 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2637.1.FUL::AG::SEP3 D -1680 -1665 GTTATATATATAGATA 8.7 2.2e-05 -10.719 4.655 4 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0563.2.SEP3 R -1861 -1852 CCTTTTTGGG 8.4 2.7e-05 -10.530 4.573 5 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA1204.1.AGL13 D -656 -639 AAACCTTAAAAAGTAAAT 7.8 2.7e-05 -10.517 4.567 6 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0563.1.SEP3 R -1861 -1851 GCCTTTTTGGG 8.4 2.9e-05 -10.448 4.537 7 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0005.3.AG R -910 -895 TTACCAAAATGTGAAA 8.6 2.9e-05 -10.441 4.534 8 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2638.1.FUL::SEP3 D -1680 -1665 GTTATATATATAGATA 7.6 3.8e-05 -10.173 4.418 9 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0585.2.AGL1 R -910 -895 TTACCAAAATGTGAAA 8.2 4.2e-05 -10.071 4.374 10 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2638.1.FUL::SEP3 R -1680 -1665 TATCTATATATATAAC 7.4 4.4e-05 -10.028 4.355 11 2 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0585.1.AGL1 R -911 -894 ATTACCAAAATGTGAAAT 8.1 4.7e-05 -9.973 4.331 12 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2731.1.sep3 D -656 -636 AAACCTTAAAAAGTAAATAAA 5.9 5.6e-05 -9.795 4.254 13 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2731.1.sep3 D -198 -178 ATTTCATAAAAACGATAAATT 5.7 6.3e-05 -9.674 4.201 14 2 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2731.1.sep3 R -1287 -1267 TACGCTAAAAATGACAAAATA 5.6 6.6e-05 -9.622 4.179 15 3 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2635.1.FUL R -1680 -1665 TATCTATATATATAAC 7.2 6.7e-05 -9.607 4.172 16 2 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0001.2.AGL3 R -692 -675 AATACCAATTTAAGATAA 7.4 9.4e-05 -9.271 4.026 17 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA1204.1.AGL13 D -691 -674 TATCTTAAATTGGTATTA 5.6 9.6e-05 -9.251 4.018 18 2 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA0555.2.SVP R -910 -895 TTACCAAAATGTGAAA 7.0 9.6e-05 -9.247 4.016 19 1 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA1205.1.AGL6 D -691 -673 TATCTTAAATTGGTATTAT 6.1 9.7e-05 -9.236 4.011 20 2 PmAGO5_Pmu.6_1G580750-v1.0.a1::Pmu6_1:8433121-8435121(+) site MA2635.1.FUL D -1676 -1661 TATATATAGATAGATA 6.6 1.0e-04 -9.171 3.983 21 3 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) limit START_END D -2000 -1 . 0 0 0 0 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2635.1.FUL D -553 -538 TCTCTATAAATAGAGA 9.8 7.5e-06 -11.800 5.125 1 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2637.1.FUL::AG::SEP3 D -553 -538 TCTCTATAAATAGAGA 9.5 9.7e-06 -11.542 5.013 2 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0559.1.PI R -1111 -1098 CAAAAAGAGGTAAG 9.0 1.9e-05 -10.866 4.719 3 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.1.AGL3 D -550 -541 CTATAAATAG 8.6 2.4e-05 -10.637 4.619 4 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2638.1.FUL::SEP3 R -553 -538 TCTCTATTTATAGAGA 8.2 2.4e-05 -10.622 4.613 5 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0940.1.AP1 D -550 -538 CTATAAATAGAGA 8.3 3.4e-05 -10.299 4.473 6 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2638.1.FUL::SEP3 R -1217 -1202 TTAGTTTATATAGCAA 7.2 5.1e-05 -9.874 4.288 7 2 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.2.AGL3 R -554 -537 CTCTCTATTTATAGAGAG 7.9 5.9e-05 -9.741 4.230 8 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2638.1.FUL::SEP3 D -1217 -1202 TTGCTATATAAACTAA 7.0 5.9e-05 -9.734 4.228 9 3 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.2.AGL3 D -554 -537 CTCTCTATAAATAGAGAG 7.8 6.5e-05 -9.635 4.184 10 2 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.3.AGL3 D -550 -541 CTATAAATAG 7.9 6.6e-05 -9.618 4.177 11 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.3.AGL3 R -550 -541 CTATTTATAG 7.9 6.6e-05 -9.618 4.177 12 2 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0558.2.FLC D -550 -537 CTATAAATAGAGAG 7.6 7.1e-05 -9.548 4.147 13 1 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA0001.1.AGL3 R -550 -541 CTATTTATAG 7.6 7.9e-05 -9.445 4.102 14 2 PmAGO5_Pmu.8_1G792000-v1.0.a1::Pmu8_1:15507842-15509842(+) site MA2636.1.FUL::AG R -553 -536 GCTCTCTATTTATAGAGA 6.4 1.0e-04 -9.180 3.987 15 1 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 MA0001.1.AGL3 10 4 1 -31.300 9.800 41.100 a:0.306 c:0.195 g:0.172 t:0.327 ; 2 MA0005.1.AG 11 4 1 -26.300 9.900 36.200 a:0.306 c:0.195 g:0.172 t:0.327 ; 3 MA0082.1.squamosa 14 4 1 -36.800 12.200 49.000 a:0.306 c:0.195 g:0.172 t:0.327 ; 4 MA0548.1.AGL15 15 4 1 -40.000 13.900 53.900 a:0.306 c:0.195 g:0.172 t:0.327 ; 5 MA0554.1.SOC1 15 4 1 -60.000 14.500 74.500 a:0.306 c:0.195 g:0.172 t:0.327 ; 6 MA0555.1.SVP 20 4 1 -45.100 17.400 62.500 a:0.306 c:0.195 g:0.172 t:0.327 ; 7 MA0556.1.AP3 15 4 1 -51.800 14.400 66.200 a:0.306 c:0.195 g:0.172 t:0.327 ; 8 MA0558.1.FLC 21 4 1 -48.300 16.800 65.100 a:0.306 c:0.195 g:0.172 t:0.327 ; 9 MA0559.1.PI 14 4 1 -45.200 14.600 59.800 a:0.306 c:0.195 g:0.172 t:0.327 ; 10 MA0563.1.SEP3 11 4 1 -39.800 11.000 50.800 a:0.306 c:0.195 g:0.172 t:0.327 ; 11 MA0005.2.AG 18 4 1 -41.200 14.600 55.800 a:0.306 c:0.195 g:0.172 t:0.327 ; 12 MA0584.1.SEP1 18 4 1 -38.100 14.100 52.200 a:0.306 c:0.195 g:0.172 t:0.327 ; 13 MA0001.2.AGL3 18 4 1 -42.300 13.600 55.900 a:0.306 c:0.195 g:0.172 t:0.327 ; 14 MA0585.1.AGL1 18 4 1 -31.600 14.400 46.000 a:0.306 c:0.195 g:0.172 t:0.327 ; 15 MA0940.1.AP1 13 4 1 -32.300 12.600 44.900 a:0.306 c:0.195 g:0.172 t:0.327 ; 16 MA1012.1.AGL27 14 4 1 -56.800 14.600 71.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 17 MA1199.1.AGL16 15 4 1 -54.900 14.800 69.700 a:0.306 c:0.195 g:0.172 t:0.327 ; 18 MA1203.1.AGL63 15 4 1 -55.800 16.100 71.900 a:0.306 c:0.195 g:0.172 t:0.327 ; 19 MA1204.1.AGL13 18 4 1 -68.600 17.400 86.000 a:0.306 c:0.195 g:0.172 t:0.327 ; 20 MA1205.1.AGL6 19 4 1 -62.600 17.700 80.300 a:0.306 c:0.195 g:0.172 t:0.327 ; 21 MA0548.2.AGL15 19 4 1 -60.100 17.600 77.700 a:0.306 c:0.195 g:0.172 t:0.327 ; 22 MA1814.1.RIN 15 4 1 -26.900 13.500 40.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 23 MA0001.3.AGL3 10 4 1 -36.200 9.900 46.100 a:0.306 c:0.195 g:0.172 t:0.327 ; 24 MA0005.3.AG 16 4 1 -40.300 13.800 54.100 a:0.306 c:0.195 g:0.172 t:0.327 ; 25 MA0082.2.squamosa 13 4 1 -36.500 11.800 48.300 a:0.306 c:0.195 g:0.172 t:0.327 ; 26 MA0548.3.AGL15 16 4 1 -58.300 15.900 74.200 a:0.306 c:0.195 g:0.172 t:0.327 ; 27 MA0554.2.SOC1 13 4 1 -59.100 13.800 72.900 a:0.306 c:0.195 g:0.172 t:0.327 ; 28 MA0555.2.SVP 16 4 1 -40.900 15.400 56.300 a:0.306 c:0.195 g:0.172 t:0.327 ; 29 MA0556.2.AP3 13 4 1 -50.300 13.700 64.000 a:0.306 c:0.195 g:0.172 t:0.327 ; 30 MA0558.2.FLC 14 4 1 -43.800 14.600 58.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 31 MA0563.2.SEP3 10 4 1 -39.200 10.800 50.000 a:0.306 c:0.195 g:0.172 t:0.327 ; 32 MA0584.2.SEP1 13 4 1 -35.200 12.000 47.200 a:0.306 c:0.195 g:0.172 t:0.327 ; 33 MA0585.2.AGL1 16 4 1 -31.000 13.600 44.600 a:0.306 c:0.195 g:0.172 t:0.327 ; 34 MA1814.2.RIN 10 4 1 -25.000 11.400 36.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 35 MA2635.1.FUL 16 4 1 -47.800 15.800 63.600 a:0.306 c:0.195 g:0.172 t:0.327 ; 36 MA2636.1.FUL::AG 18 4 1 -45.300 18.100 63.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 37 MA2637.1.FUL::AG::SEP3 16 4 1 -32.600 14.800 47.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 38 MA2638.1.FUL::SEP3 16 4 1 -56.200 15.600 71.800 a:0.306 c:0.195 g:0.172 t:0.327 ; 39 MA2639.1.FUL::SOC1 12 4 1 -27.400 13.000 40.400 a:0.306 c:0.195 g:0.172 t:0.327 ; 40 MA2731.1.sep3 21 4 1 -57.700 21.000 78.700 a:0.306 c:0.195 g:0.172 t:0.327 ; Number of sequences scanned 9 ; Sum of sequence lengths 18000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 MA0001.1.AGL3 6 35838 ; 2 MA0005.1.AG 2 35820 ; 3 MA0082.1.squamosa 4 35766 ; 4 MA0548.1.AGL15 5 35748 ; 5 MA0554.1.SOC1 2 35748 ; 6 MA0555.1.SVP 6 35658 ; 7 MA0556.1.AP3 7 35748 ; 8 MA0558.1.FLC 10 35640 ; 9 MA0559.1.PI 11 35766 ; 10 MA0563.1.SEP3 4 35820 ; 11 MA0005.2.AG 2 35694 ; 12 MA0584.1.SEP1 2 35694 ; 13 MA0001.2.AGL3 7 35694 ; 14 MA0585.1.AGL1 2 35694 ; 15 MA0940.1.AP1 10 35784 ; 16 MA1012.1.AGL27 4 35766 ; 17 MA1199.1.AGL16 2 35748 ; 18 MA1203.1.AGL63 2 35748 ; 19 MA1204.1.AGL13 4 35694 ; 20 MA1205.1.AGL6 6 35676 ; 21 MA0548.2.AGL15 3 35676 ; 22 MA1814.1.RIN 6 35748 ; 23 MA0001.3.AGL3 6 35838 ; 24 MA0005.3.AG 1 35730 ; 25 MA0082.2.squamosa 6 35784 ; 26 MA0548.3.AGL15 3 35730 ; 27 MA0554.2.SOC1 2 35784 ; 28 MA0555.2.SVP 5 35730 ; 29 MA0556.2.AP3 7 35784 ; 30 MA0558.2.FLC 8 35766 ; 31 MA0563.2.SEP3 5 35838 ; 32 MA0584.2.SEP1 5 35784 ; 33 MA0585.2.AGL1 2 35730 ; 34 MA1814.2.RIN 4 35838 ; 35 MA2635.1.FUL 11 35730 ; 36 MA2636.1.FUL::AG 5 35694 ; 37 MA2637.1.FUL::AG::SEP3 8 35730 ; 38 MA2638.1.FUL::SEP3 11 35730 ; 39 MA2639.1.FUL::SOC1 6 35802 ; 40 MA2731.1.sep3 8 35640 ; TOTAL 210 1429830 ; Host name rsat ; Job started 2026-06-17.030714 ; Job done 2026-06-17.030951 ; Seconds 157.38 ; user 157.38 ; system 0.03 ; cuser 0.1 ; csystem 0.01