; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.040027_09a8Of.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.040027_M6xYt2.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.040027_M6xYt2.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.040027_09a8Of.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-139	-125	GAATCATGCCTTTTA	11.6	6.4e-07	-14.268	6.196	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1409	-1395	TATTTATGCTTTTGA	5.4	4.2e-04	-7.786	3.381	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-163	-149	TACTCAAGTCTTCAT	5.5	3.9e-04	-7.855	3.411	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-122	-108	GTTTCATGCCACTAC	9.7	7.9e-06	-11.748	5.102	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1362	-1348	CATACATTCCTTTCA	5.4	4.2e-04	-7.786	3.381	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1403	-1389	GAGTTATGCCAATTG	4.6	7.5e-04	-7.198	3.126	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-628	-614	GTTTCANNNNNNNNN	4.6	7.5e-04	-7.198	3.126	4	4
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-838	-824	GGACAATGCCATCTT	4.5	8.1e-04	-7.121	3.092	5	5
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-891	-877	TTCTCATGCTTGTTT	4.4	8.6e-04	-7.058	3.065	6	6
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-108	-94	GATTCATGCCTTTGT	13.0	3.0e-08	-17.330	7.526	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-72	-58	GCTTCGAGCCTTGGT	7.1	1.0e-04	-9.162	3.979	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1453	-1439	GTTTCATGGTTCTAG	5.8	3.1e-04	-8.087	3.512	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-653	-639	ATGTCATGCTCTTAT	4.8	6.5e-04	-7.334	3.185	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-378	-364	GGATCATTCCATTTG	4.4	8.6e-04	-7.058	3.065	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-882	-868	ATTATAAGCCTTAGC	4.2	1.0e-03	-6.911	3.001	6	6
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-87	-73	GTCAAATGCCTNNNN	5.6	3.6e-04	-7.939	3.448	1	1
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	160	174	TAATGATGCCTCTCC	5.5	3.9e-04	-7.855	3.411	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1042	-1028	TGTTCATCCCTTCTT	7.3	8.8e-05	-9.339	4.056	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-697	-683	NNNCCATGGCTTGAT	7.1	1.0e-04	-9.162	3.979	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	1	15	GAATTATGCCNNNNN	6.8	1.4e-04	-8.898	3.864	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-685	-671	GATTCGTGCTTCTTA	6.6	1.6e-04	-8.740	3.796	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-695	-681	GAATCAAGCCATGGN	6.5	1.8e-04	-8.648	3.756	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	136	150	GGCTCAGGGCTTGGT	5.9	2.8e-04	-8.174	3.550	6	6
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-242	-228	CAAACATGCATTTAC	5.8	3.1e-04	-8.087	3.512	7	7
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1074	-1060	AACTTAAGCCTTCGG	5.7	3.3e-04	-8.008	3.478	8	8
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-323	-309	ATATCATGNNNNNNN	4.8	6.5e-04	-7.334	3.185	9	9
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	138	152	GAACCAAGCCCTGAG	4.8	6.5e-04	-7.334	3.185	10	10
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1109	-1095	GACTCACGCCCTTTA	7.8	5.6e-05	-9.788	4.251	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	15	29	GAATTATGCCTATAT	7.1	1.0e-04	-9.162	3.979	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-421	-407	GAATCAAGCCATCCT	7.0	1.2e-04	-9.068	3.938	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-411	-397	GATTCGTGCTTCCCC	6.3	2.0e-04	-8.493	3.688	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	39	53	AAGTCAAGCNNNNNN	4.5	8.1e-04	-7.121	3.092	5	5
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1000	-986	AACTTATGTCTTTGG	4.3	9.2e-04	-6.987	3.034	6	6
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-66	-52	TTCTCATGCATCCAC	5.4	4.2e-04	-7.786	3.381	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-167	-153	TTCTCATGCATCCGA	5.2	4.9e-04	-7.628	3.313	2	2
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	167	181	GCGTCATCGCTCATC	4.4	8.6e-04	-7.058	3.065	3	3
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-156	-142	GTTACATGGCTTTTG	8.7	2.3e-05	-10.672	4.635	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-201	-187	GAAACATGCCAATAT	5.3	4.5e-04	-7.710	3.349	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1206	-1192	TGCACATGCCAATAC	4.7	7.0e-04	-7.262	3.154	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-712	-698	TCTTCAAGCCTAACT	4.7	7.0e-04	-7.262	3.154	4	4
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	7	21	CGATCAAGCCTTGAT	8.3	3.4e-05	-10.277	4.463	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	5	19	CTATCAAGGCTTGAT	5.9	2.8e-04	-8.174	3.550	2	2
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1166	-1152	CACACATGCATTACT	5.3	4.5e-04	-7.710	3.349	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-134	-120	GTCTCATGCCTTTTT	12.1	2.7e-07	-15.124	6.568	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-147	-133	TTCCCATGCTTTTTC	6.3	2.0e-04	-8.493	3.688	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-381	-367	GAGTCATGCTTTGAC	9.0	1.7e-05	-11.002	4.778	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	51	65	GTCCTATGCCTTTAA	7.8	5.6e-05	-9.788	4.251	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-58	-44	ATTCCATTCCTTCAA	4.3	9.2e-04	-6.987	3.034	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1085	-1071	ATTTCTTGTCTTTAA	4.2	1.0e-03	-6.911	3.001	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-55	-41	GTCCCATGCCTTTAA	10.4	3.4e-06	-12.596	5.470	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-693	-679	GAGTCATGCTTTGAC	9.0	1.7e-05	-11.002	4.778	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-147	-133	CTTCCATTCCTTCAA	5.1	5.2e-04	-7.561	3.284	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-118	-104	GTCCCATGCCTTTAC	11.3	1.0e-06	-13.820	6.002	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-572	-558	AATAAATGCCTTCTA	6.1	2.4e-04	-8.331	3.618	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1	13	GTTTCATGCCTTTCC	12.6	8.3e-08	-16.307	7.082	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1486	-1472	CAACCATGCCTAGTC	7.3	8.8e-05	-9.339	4.056	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1457	-1443	CAACCATGCCTAGTC	7.3	8.8e-05	-9.339	4.056	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-988	-974	GGTTCATGTCTAAAT	5.8	3.1e-04	-8.087	3.512	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1474	-1460	GTCTCACGCTTCTCC	5.7	3.3e-04	-8.008	3.478	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1086	-1072	GTTTAATGCATTCAA	5.0	5.6e-04	-7.480	3.249	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-604	-590	GATNNNNNNNTTTAC	4.7	7.0e-04	-7.262	3.154	6	6
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1228	-1214	GAGTCATGACCTTCC	4.2	1.0e-03	-6.911	3.001	7	7
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-883	-869	AGTCCATGCCTCTCC	8.4	3.1e-05	-10.377	4.507	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	124	138	CATTCAACCCTTTGA	6.0	2.6e-04	-8.244	3.580	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-641	-627	TGTTCTGGCCTTCTT	4.7	7.0e-04	-7.262	3.154	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-894	-880	GAACCATGCATAGTC	4.5	8.1e-04	-7.121	3.092	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	69	83	CCTTTACGCCATTGC	4.4	8.6e-04	-7.058	3.065	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-891	-877	AGTCCATGCCTCTCC	8.4	3.1e-05	-10.377	4.507	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-650	-636	TGTTCTGGCCTTCTT	4.7	7.0e-04	-7.262	3.154	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-138	-124	GAAGCATGCCATCTA	4.7	7.0e-04	-7.262	3.154	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-902	-888	GAACCATGCATAGTC	4.5	8.1e-04	-7.121	3.092	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	69	83	CCTTTACGCCATTGC	4.4	8.6e-04	-7.058	3.065	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1063	-1049	TTTCCACGCCTCACA	4.2	1.0e-03	-6.911	3.001	6	6
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-296	-282	GAAACATGTCTTTTT	6.4	1.9e-04	-8.574	3.724	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1236	-1222	GTCCCATGCTTCTCC	6.3	2.0e-04	-8.493	3.688	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1410	-1396	GATTCAACCCTACGC	5.9	2.8e-04	-8.174	3.550	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1248	-1234	GAACCATGCCCAGTC	5.2	4.9e-04	-7.628	3.313	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-306	-292	GAAACATGTCTTTTT	6.4	1.9e-04	-8.574	3.724	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-980	-966	GTACCATGCTTCTCC	6.0	2.6e-04	-8.244	3.580	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1127	-1113	GATTCAACCCTACGC	5.9	2.8e-04	-8.174	3.550	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-109	-95	TTGTCATTCCTTTCT	5.1	5.2e-04	-7.561	3.284	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-992	-978	GAACCATGCCCAGTA	4.7	7.0e-04	-7.262	3.154	5	5
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-306	-292	GAAACATGTCTTTTT	6.4	1.9e-04	-8.574	3.724	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-804	-790	GAGCCTTGCCTCATA	5.3	4.5e-04	-7.710	3.349	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-109	-95	TTGTCATTCCTTTCT	5.1	5.2e-04	-7.561	3.284	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-867	-853	AGGTCATGCATCCTG	4.6	7.5e-04	-7.198	3.126	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-318	-304	CATTCATCCCATTTA	6.4	1.9e-04	-8.574	3.724	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-806	-792	CGGTCATGCTATCCA	5.6	3.6e-04	-7.939	3.448	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	168	182	TATTCAACCCTTGGA	4.7	7.0e-04	-7.262	3.154	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-165	-151	GTAACTTGCCATTTG	4.3	9.2e-04	-6.987	3.034	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-93	-79	TTCTCATGCTTTCCT	7.0	1.2e-04	-9.068	3.938	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-756	-742	GACACTTGCCATTTT	5.5	3.9e-04	-7.855	3.411	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-710	-696	TTTTCTTGGCTCTAT	4.3	9.2e-04	-6.987	3.034	3	3
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-51	-37	TTTACATGCATTTAT	5.8	3.1e-04	-8.087	3.512	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1418	-1404	TGCTCATTCCTCCCG	4.2	1.0e-03	-6.911	3.001	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-48	-34	CTTTCATGGCATGCC	7.0	1.2e-04	-9.068	3.938	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	137	151	ACTCCATGCCCTTCA	5.7	3.3e-04	-8.008	3.478	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1050	-1036	GTTTCAAGTCATTGC	5.3	4.5e-04	-7.710	3.349	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-547	-533	GATACATGCTAATAT	4.5	8.1e-04	-7.121	3.092	4	4
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1006	-992	TAGTAATGGCTTCTC	5.8	3.1e-04	-8.087	3.512	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-1383	-1369	GATTAACGGCTTCGG	5.5	3.9e-04	-7.855	3.411	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-989	-975	TTTTCATTCCTTTCA	5.5	3.9e-04	-7.855	3.411	3	3
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-727	-713	GGCTCTCGGCTTTTC	5.1	5.2e-04	-7.561	3.284	4	4
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-431	-417	CTTTCATCCCCTAAC	5.1	5.2e-04	-7.561	3.284	5	5
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-223	-209	TACTTATGCATTTTC	5.1	5.2e-04	-7.561	3.284	6	6
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-77	-63	GACCCATGCATAGAG	4.7	7.0e-04	-7.262	3.154	7	7
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-1294	-1280	CACTTATGCCACATT	4.4	8.6e-04	-7.058	3.065	8	8
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m7oligos_6-8nt_m7	D	-734	-720	TGATCGTGGCTCTCG	4.2	1.0e-03	-6.911	3.001	9	9
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	-665	-651	NNNNNACGCCTCCAT	5.1	5.2e-04	-7.561	3.284	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m7oligos_6-8nt_m7	R	57	71	CCTTTACGCCATTTC	4.4	8.6e-04	-7.058	3.065	1	1
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m7oligos_6-8nt_m7	15	4	1	-34.200	14.000	48.200	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m7oligos_6-8nt_m7	110	101144
;		TOTAL          	110	101144
; Host name	rsat
; Job started	2026-06-17.040028
; Job done	2026-06-17.040037
; Seconds	9.66
;	user	9.66
;	system	0.01
;	cuser	0.1
;	csystem	0.02