; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.041502_bB7mOd.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.041502_cy36x5.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.041502_cy36x5.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.041502_bB7mOd.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33425 ; c 0.18710 ; g 0.15730 ; t 0.32135 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 limit START_END D -51 199 . 0 0 0 0 AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 site oligos_6-8nt_m7oligos_6-8nt_m7 R -8 6 GGTTCAAGGCTTCCG 7.7 6.3e-05 -9.677 4.203 1 1 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D limit START_END D -136 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m7oligos_6-8nt_m7 D 54 68 CCGCCGTGCCTCCGC 6.0 2.7e-04 -8.212 3.566 1 1 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m7oligos_6-8nt_m7 D -112 -98 GTTTTAGGGCTTCGT 4.5 8.4e-04 -7.086 3.077 2 2 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D limit START_END D -184 199 . 0 0 0 0 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 limit START_END D -1501 199 . 0 0 0 0 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1085 -1071 ATCTCATGNNNNNNN 5.3 4.6e-04 -7.679 3.335 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m7oligos_6-8nt_m7 D -59 -45 AGTTTGTGCCTTTCC 5.3 4.6e-04 -7.679 3.335 2 2 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m7oligos_6-8nt_m7 R -298 -284 CCATCATGCTNNNNN 4.6 7.7e-04 -7.165 3.112 3 3 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m7oligos_6-8nt_m7 R -971 -957 CTACCATGNNNNNNN 4.5 8.4e-04 -7.086 3.077 4 4 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m7oligos_6-8nt_m7 D -939 -925 NNNCCATCCCTTTTA 6.0 2.7e-04 -8.212 3.566 1 1 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m7oligos_6-8nt_m7 R -24 -10 CATTCATCCATTTTC 5.2 5.0e-04 -7.597 3.299 2 2 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m7oligos_6-8nt_m7 R 50 64 GTTTCANNNNNNNNN 4.6 7.7e-04 -7.165 3.112 3 3 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 limit START_END D -143 199 . 0 0 0 0 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m7oligos_6-8nt_m7 D 161 175 AACTCATGCCTCCCA 8.4 3.1e-05 -10.371 4.504 1 1 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 limit START_END D -1 199 . 0 0 0 0 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 limit START_END D -1415 199 . 0 0 0 0 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1015 -1001 NNNNNNNNCCTTTTA 5.0 5.8e-04 -7.447 3.234 1 1 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m7oligos_6-8nt_m7 R -980 -966 NNNNNNNGCCTACAT 4.8 6.7e-04 -7.303 3.171 2 2 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m7oligos_6-8nt_m7 D 148 162 GAATCATNNNNNNNN 4.7 7.3e-04 -7.229 3.140 3 3 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1046 -1032 NNNNNNNNCCTTATA 4.5 8.4e-04 -7.086 3.077 4 4 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m7oligos_6-8nt_m7 D -313 -299 AACCCATGTCATTAT 4.3 9.5e-04 -6.954 3.020 5 5 T459_28413|Capsicum_annuum.ASM51225v2.60|T459_28413 limit START_END D -1501 199 . 0 0 0 0 AUR62039389.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62039389.v1.0 limit START_END D -1501 199 . 0 0 0 0 AUR62039389.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62039389.v1.0 site oligos_6-8nt_m7oligos_6-8nt_m7 R 143 157 GATCGATGCCTCTTC 7.4 8.2e-05 -9.408 4.086 1 1 AUR62039389.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62039389.v1.0 site oligos_6-8nt_m7oligos_6-8nt_m7 D -189 -175 GATCCATGCTAATGT 4.4 8.9e-04 -7.024 3.051 2 2 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 limit START_END D -1501 199 . 0 0 0 0 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1431 -1417 GTTTCATGGCATACA 7.1 1.1e-04 -9.139 3.969 1 1 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 R -500 -486 TATTTAAGCCTTGAC 6.3 2.1e-04 -8.462 3.675 2 2 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1127 -1113 CACTAATGCCACTTT 5.2 5.0e-04 -7.597 3.299 3 3 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 R -281 -267 TATTTAAGCCTTAAA 5.1 5.4e-04 -7.529 3.270 4 4 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1208 -1194 NNNNNNNNCCTTTGA 4.6 7.7e-04 -7.165 3.112 5 5 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1446 -1432 GAATCTTGCATTTTT 4.5 8.4e-04 -7.086 3.077 6 6 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 R -714 -700 ACTTCTTGCCATATA 4.4 8.9e-04 -7.024 3.051 7 7 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 R -527 -513 CTTTTAAGCCTATCT 4.3 9.5e-04 -6.954 3.020 8 8 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m7oligos_6-8nt_m7 D -502 -488 ATGTCAAGGCTTAAA 4.3 9.5e-04 -6.954 3.020 9 9 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 limit START_END D -1501 199 . 0 0 0 0 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 D -304 -290 AATCCATGCCTCAAA 6.7 1.5e-04 -8.788 3.817 1 1 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 R -44 -30 TACTCAAGCCCTAAT 5.4 4.3e-04 -7.755 3.368 2 2 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 R -223 -209 TATTTAAGCCTCGAC 5.2 5.0e-04 -7.597 3.299 3 3 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 D -986 -972 GATTCATCGCTCAAA 4.6 7.7e-04 -7.165 3.112 4 4 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 D -184 -170 AATACAAGCCTCAAA 4.4 8.9e-04 -7.024 3.051 5 5 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m7oligos_6-8nt_m7 R -354 -340 TTTTCATTCCATCTC 4.2 1.0e-03 -6.876 2.986 6 6 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 limit START_END D -1501 199 . 0 0 0 0 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m7oligos_6-8nt_m7 R 66 80 TGTTTATGGCTTCCT 5.5 4.0e-04 -7.822 3.397 1 1 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m7oligos_6-8nt_m7 R -444 -430 ATTTCATGGCCTACT 5.2 5.0e-04 -7.597 3.299 2 2 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m7oligos_6-8nt_m7 D -6 8 CAATAATGGCTTCAA 4.8 6.7e-04 -7.303 3.171 3 3 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m7oligos_6-8nt_m7 R -4 10 CATTGAAGCCATTAT 4.4 8.9e-04 -7.024 3.051 4 4 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m7oligos_6-8nt_m7 R -9 5 TATTCATGCTTTAAA 7.1 1.1e-04 -9.139 3.969 1 1 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m7oligos_6-8nt_m7 R -138 -124 GTATCTTGCTTTTAA 5.1 5.4e-04 -7.529 3.270 2 2 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m7oligos_6-8nt_m7 R -137 -123 TGTTCATGCTTTAAG 6.7 1.5e-04 -8.788 3.817 1 1 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m7oligos_6-8nt_m7 D -6 8 GAACCATGGCTCCAT 6.4 1.9e-04 -8.543 3.710 2 2 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m7oligos_6-8nt_m7 R -220 -206 ATTTCACGCCCTATA 5.4 4.3e-04 -7.755 3.368 3 3 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m7oligos_6-8nt_m7 D -174 -160 TGGCCATGCNNNNNN 4.9 6.2e-04 -7.382 3.206 4 4 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 limit START_END D -1501 199 . 0 0 0 0 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m7oligos_6-8nt_m7 D -301 -287 ATATCATGCTTTAGC 6.6 1.6e-04 -8.713 3.784 1 1 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m7oligos_6-8nt_m7 D -825 -811 TCTTCTTGCCCTCTC 4.5 8.4e-04 -7.086 3.077 2 2 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m7oligos_6-8nt_m7 D -508 -494 CTTCAAAGCCTTCTG 4.4 8.9e-04 -7.024 3.051 3 3 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m7oligos_6-8nt_m7 15 4 1 -34.200 13.900 48.100 a:0.334 c:0.187 g:0.157 t:0.321 ; Number of sequences scanned 17 ; Sum of sequence lengths 21841 ; N residues 5555 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m7oligos_6-8nt_m7 46 43206 ; TOTAL 46 43206 ; Host name rsat ; Job started 2026-06-17.041502 ; Job done 2026-06-17.041507 ; Seconds 4.96 ; user 4.96 ; system 0.04 ; cuser 0.1 ; csystem 0.02