; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.041738_QRi8KP.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.041738_6Dk8QK.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.041738_6Dk8QK.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.041738_QRi8KP.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33425 ; c 0.18710 ; g 0.15730 ; t 0.32135 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 limit START_END D -51 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D limit START_END D -136 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D 79 92 CAACACGCCGTCAT 5.3 4.5e-04 -7.708 3.348 1 1 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D limit START_END D -184 199 . 0 0 0 0 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D 42 55 CAACACGCCGTCAT 5.3 4.5e-04 -7.708 3.348 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 limit START_END D -1501 199 . 0 0 0 0 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -298 -285 CATCATGCTNNNNN 6.1 2.5e-04 -8.291 3.601 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1084 -1071 TCTCATGNNNNNNN 6.0 2.7e-04 -8.210 3.565 2 2 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -971 -958 TACCATGNNNNNNN 5.9 2.9e-04 -8.142 3.536 3 3 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D 87 100 GAATATGGCTTCAT 4.5 7.8e-04 -7.157 3.108 4 4 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -889 -876 TATGATGCCCCTCA 4.3 8.8e-04 -7.033 3.054 5 5 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -398 -385 TTATATGCATTTTT 4.7 6.8e-04 -7.289 3.166 1 1 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 D -938 -925 NNCCATCCCTTTTA 4.2 9.5e-04 -6.963 3.024 2 2 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 limit START_END D -143 199 . 0 0 0 0 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D 162 175 ACTCATGCCTCCCA 8.4 3.5e-05 -10.268 4.459 1 1 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 limit START_END D -1 199 . 0 0 0 0 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -492 -479 CTGCATGCCATCTC 8.3 3.8e-05 -10.167 4.416 1 1 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 limit START_END D -1415 199 . 0 0 0 0 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m2oligos_6-8nt_m2 D -312 -299 ACCCATGTCATTAT 6.0 2.7e-04 -8.210 3.565 1 1 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1015 -1002 NNNNNNNCCTTTTA 4.9 5.9e-04 -7.432 3.228 2 2 BVRB_4g071180|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g071180 site oligos_6-8nt_m2oligos_6-8nt_m2 D 149 162 AATCATNNNNNNNN 4.5 7.8e-04 -7.157 3.108 3 3 T459_28413|Capsicum_annuum.ASM51225v2.60|T459_28413 limit START_END D -1501 199 . 0 0 0 0 T459_28413|Capsicum_annuum.ASM51225v2.60|T459_28413 site oligos_6-8nt_m2oligos_6-8nt_m2 D -946 -933 TATCATACCATTTC 6.3 2.1e-04 -8.447 3.669 1 1 T459_28413|Capsicum_annuum.ASM51225v2.60|T459_28413 site oligos_6-8nt_m2oligos_6-8nt_m2 D -970 -957 CATGATGCTTTTTA 4.6 7.2e-04 -7.230 3.140 2 2 T459_28413|Capsicum_annuum.ASM51225v2.60|T459_28413 site oligos_6-8nt_m2oligos_6-8nt_m2 D -961 -948 TTTTATGGCTATTT 4.1 1.0e-03 -6.906 2.999 3 3 AUR62039389.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62039389.v1.0 limit START_END D -1501 199 . 0 0 0 0 AUR62039389.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62039389.v1.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R 143 156 ATCGATGCCTCTTC 7.3 9.4e-05 -9.267 4.025 1 1 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 limit START_END D -1501 199 . 0 0 0 0 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 R -815 -802 TAGCATGCAATTTG 5.5 3.9e-04 -7.842 3.406 1 1 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 R -146 -133 AAGCATGCATTCAG 5.0 5.6e-04 -7.494 3.254 2 2 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1445 -1432 AATCTTGCATTTTT 4.7 6.8e-04 -7.289 3.166 3 3 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1430 -1417 TTTCATGGCATACA 4.7 6.8e-04 -7.289 3.166 4 4 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1127 -1114 ACTAATGCCACTTT 4.4 8.3e-04 -7.098 3.083 5 5 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 R -500 -487 ATTTAAGCCTTGAC 4.3 8.8e-04 -7.033 3.054 6 6 Cla97C05G087480|Citrullus_lanatus.Cla97_v1.62|Cla97C05G087480 site oligos_6-8nt_m2oligos_6-8nt_m2 R -371 -358 TAGCATGCATATAA 4.2 9.5e-04 -6.963 3.024 7 7 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 limit START_END D -1501 199 . 0 0 0 0 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m2oligos_6-8nt_m2 R 102 115 AAGCATGCATTTAG 6.4 2.0e-04 -8.524 3.702 1 1 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m2oligos_6-8nt_m2 D -303 -290 ATCCATGCCTCAAA 5.4 4.2e-04 -7.777 3.377 2 2 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1360 -1347 CTTTATGGCATTTT 5.1 5.2e-04 -7.570 3.288 3 3 MELO3C006644.2|Cucumis_melo.Melonv4.60|MELO3C006644.2 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1146 -1133 ACTCATACCTCGTT 4.6 7.2e-04 -7.230 3.140 4 4 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 limit START_END D -1501 199 . 0 0 0 0 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m2oligos_6-8nt_m2 R 66 79 GTTTATGGCTTCCT 5.0 5.6e-04 -7.494 3.254 1 1 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m2oligos_6-8nt_m2 R -152 -139 TACCCTGCCCTTCC 4.6 7.2e-04 -7.230 3.140 2 2 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m2oligos_6-8nt_m2 R -444 -431 TTTCATGGCCTACT 4.5 7.8e-04 -7.157 3.108 3 3 Csa_3G821020|Cucumis_sativus.ASM407v2.60|Csa_3G821020 site oligos_6-8nt_m2oligos_6-8nt_m2 R -980 -967 AACTATGCTTTTGT 4.4 8.3e-04 -7.098 3.083 4 4 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 limit START_END D -1501 199 . 0 0 0 0 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m2oligos_6-8nt_m2 R -9 4 ATTCATGCTTTAAA 4.6 7.2e-04 -7.230 3.140 1 1 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m2oligos_6-8nt_m2 R 75 88 AACCATGGTTATAC 4.5 7.8e-04 -7.157 3.108 2 2 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m2oligos_6-8nt_m2 R -138 -125 TATCTTGCTTTTAA 4.4 8.3e-04 -7.098 3.083 3 3 HanXRQr2_Chr13g0590341|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0590341 site oligos_6-8nt_m2oligos_6-8nt_m2 R 142 155 CACCATGACCTTTG 4.3 8.8e-04 -7.033 3.054 4 4 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 limit START_END D -1501 199 . 0 0 0 0 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m2oligos_6-8nt_m2 D -5 8 AACCATGGCTCCAT 6.4 2.0e-04 -8.524 3.702 1 1 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m2oligos_6-8nt_m2 D -173 -160 GGCCATGCNNNNNN 5.4 4.2e-04 -7.777 3.377 2 2 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m2oligos_6-8nt_m2 R 64 77 CTCCATGGCCTTTG 5.4 4.2e-04 -7.777 3.377 3 3 gene-LSAT_6X52001|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_6X52001 site oligos_6-8nt_m2oligos_6-8nt_m2 R -137 -124 GTTCATGCTTTAAG 4.4 8.3e-04 -7.098 3.083 4 4 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 limit START_END D -1501 199 . 0 0 0 0 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m2oligos_6-8nt_m2 D -300 -287 TATCATGCTTTAGC 6.0 2.7e-04 -8.210 3.565 1 1 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m2oligos_6-8nt_m2 D -824 -811 CTTCTTGCCCTCTC 4.9 5.9e-04 -7.432 3.228 2 2 gene14703|Medicago_truncatula.MtrunA17r50ANR.60|gene14703 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1261 -1248 AGTCATACCATTCT 4.2 9.5e-04 -6.963 3.024 3 3 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 14 4 1 -30.400 13.100 43.500 a:0.334 c:0.187 g:0.157 t:0.321 ; Number of sequences scanned 17 ; Sum of sequence lengths 21841 ; N residues 5555 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 44 43240 ; TOTAL 44 43240 ; Host name rsat ; Job started 2026-06-17.041738 ; Job done 2026-06-17.041742 ; Seconds 4.21 ; user 4.21 ; system 0.03 ; cuser 0.11 ; csystem 0.01