; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.042536_vIapGp.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.042536_QPmwJS.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.042536_QPmwJS.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.042536_vIapGp.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-139	-125	GAATCATGCCTTTTA	12.6	1.5e-07	-15.735	6.834	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-42	-28	GGCCCAGGGCATTGT	4.4	7.4e-04	-7.211	3.132	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1033	-1019	GTAACATGTCACTTA	7.4	7.7e-05	-9.478	4.116	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1369	-1355	TGACCATGACAATTC	4.1	9.0e-04	-7.013	3.046	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-122	-108	GTTTCATGCCACTAC	8.5	2.9e-05	-10.464	4.544	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1403	-1389	GAGTTATGCCAATTG	5.0	4.9e-04	-7.614	3.307	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-838	-824	GGACAATGCCATCTT	4.8	5.7e-04	-7.476	3.247	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-108	-94	GATTCATGCCTTTGT	11.1	1.6e-06	-13.350	5.798	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-62	-48	GAAGCATGCCGCTGA	9.3	1.3e-05	-11.218	4.872	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-656	-642	AGAGCATGACATTAT	5.9	2.6e-04	-8.273	3.593	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-378	-364	GGATCATTCCATTTG	5.5	3.5e-04	-7.971	3.462	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-720	-706	GCAACAAGCCTAATA	5.3	4.0e-04	-7.833	3.402	5	5
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-87	-73	GTCAAATGCCTNNNN	5.3	4.0e-04	-7.833	3.402	1	1
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	160	174	TAATGATGCCTCTCC	3.9	1.0e-03	-6.879	2.987	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-242	-228	CAAACATGCATTTAC	7.9	4.9e-05	-9.916	4.307	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	1	15	GAATTATGCCNNNNN	7.4	7.7e-05	-9.478	4.116	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-695	-681	GAATCAAGCCATGGN	6.5	1.6e-04	-8.728	3.791	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-697	-683	NNNCCATGGCTTGAT	5.9	2.6e-04	-8.273	3.593	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-323	-309	ATATCATGNNNNNNN	5.4	3.7e-04	-7.905	3.433	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1042	-1028	TGTTCATCCCTTCTT	4.7	6.1e-04	-7.407	3.217	6	6
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	138	152	GAACCAAGCCCTGAG	4.4	7.4e-04	-7.211	3.132	7	7
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	136	150	GGCTCAGGGCTTGGT	4.3	7.9e-04	-7.145	3.103	8	8
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	15	29	GAATTATGCCTATAT	7.9	4.9e-05	-9.916	4.307	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-421	-407	GAATCAAGCCATCCT	6.0	2.4e-04	-8.339	3.622	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1109	-1095	GACTCACGCCCTTTA	5.4	3.7e-04	-7.905	3.433	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-314	-300	GATTCATGCAGATAT	4.7	6.1e-04	-7.407	3.217	4	4
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-727	-713	CAAGCATACCTNNNN	4.6	6.5e-04	-7.346	3.190	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-201	-187	GAAACATGCCAATAT	9.6	9.9e-06	-11.522	5.004	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-156	-142	GTTACATGGCTTTTG	8.1	4.2e-05	-10.085	4.380	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1206	-1192	TGCACATGCCAATAC	7.7	5.9e-05	-9.730	4.226	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-146	-132	GTAACATGACATAAG	5.7	3.0e-04	-8.116	3.525	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1369	-1355	ACAACATCTCTTTTT	5.0	4.9e-04	-7.614	3.307	5	5
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	7	21	CGATCAAGCCTTGAT	6.0	2.4e-04	-8.339	3.622	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1166	-1152	CACACATGCATTACT	5.2	4.3e-04	-7.755	3.368	2	2
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	24	38	CAAACATCCCATATG	4.4	7.4e-04	-7.211	3.132	3	3
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	83	97	GTAACATACATATTG	4.2	8.5e-04	-7.072	3.071	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-134	-120	GTCTCATGCCTTTTT	12.3	2.5e-07	-15.213	6.607	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-147	-133	TTCCCATGCTTTTTC	5.2	4.3e-04	-7.755	3.368	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1308	-1294	GTAACATGTCGAATA	4.6	6.5e-04	-7.346	3.190	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1076	-1062	GACACCGGCCTTGGT	3.9	1.0e-03	-6.879	2.987	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-124	-110	GAGACAGGCCGAGCA	3.9	1.0e-03	-6.879	2.987	5	5
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	51	65	GTCCTATGCCTTTAA	8.6	2.6e-05	-10.544	4.579	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-381	-367	GAGTCATGCTTTGAC	5.0	4.9e-04	-7.614	3.307	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	61	75	AGGACATGCCAAGCA	4.4	7.4e-04	-7.211	3.132	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-384	-370	AAAGCATGACTCTAA	4.3	7.9e-04	-7.145	3.103	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-55	-41	GTCCCATGCCTTTAA	11.2	1.4e-06	-13.509	5.867	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1245	-1231	GGCCCATCCCGTTTA	7.6	6.4e-05	-9.650	4.191	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-80	-66	GTCCCATGCCGGATT	6.3	1.9e-04	-8.578	3.725	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-45	-31	GGGACATGCCGAGCA	6.3	1.9e-04	-8.578	3.725	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1315	-1301	GTCCCATCCCGTCAT	5.7	3.0e-04	-8.116	3.525	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-693	-679	GAGTCATGCTTTGAC	5.0	4.9e-04	-7.614	3.307	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-696	-682	AAAGCATGACTCTAG	4.3	7.9e-04	-7.145	3.103	7	7
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-118	-104	GTCCCATGCCTTTAC	12.0	4.1e-07	-14.708	6.388	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1297	-1283	GTTACATGTCGTTTT	7.8	5.4e-05	-9.820	4.265	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1044	-1030	GTTACATGTCGTTTT	7.8	5.4e-05	-9.820	4.265	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1350	-1336	TGTACATGCAATAAC	4.0	9.7e-04	-6.943	3.015	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1097	-1083	TGTACATGCAATAAC	4.0	9.7e-04	-6.943	3.015	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1	13	GTTTCATGCCTTTCC	10.6	3.1e-06	-12.695	5.513	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	53	67	GAAGCACGCCGCTGA	5.0	4.9e-04	-7.614	3.307	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-234	-220	NNNNNNNGCCGCTAN	4.5	6.9e-04	-7.272	3.158	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1486	-1472	CAACCATGCCTAGTC	7.6	6.4e-05	-9.650	4.191	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1457	-1443	CAACCATGCCTAGTC	7.6	6.4e-05	-9.650	4.191	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1228	-1214	GAGTCATGACCTTCC	4.9	5.3e-04	-7.552	3.280	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-124	GAAGCATGCCATATA	9.7	8.9e-06	-11.631	5.051	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-301	-287	AAAACATGCCAGTTT	7.6	6.4e-05	-9.650	4.191	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-883	-869	AGTCCATGCCTCTCC	7.1	9.9e-05	-9.224	4.006	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-894	-880	GAACCATGCATAGTC	6.9	1.2e-04	-9.059	3.934	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-743	-729	AATATATGTCTTTAT	4.0	9.7e-04	-6.943	3.015	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-124	GAAGCATGCCATCTA	9.9	7.1e-06	-11.852	5.147	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-296	-282	CAAACATGCCAGTTT	7.4	7.7e-05	-9.478	4.116	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-891	-877	AGTCCATGCCTCTCC	7.1	9.9e-05	-9.224	4.006	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-902	-888	GAACCATGCATAGTC	6.9	1.2e-04	-9.059	3.934	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-754	-740	CGAATATGTCTTTAT	5.3	4.0e-04	-7.833	3.402	5	5
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-296	-282	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1248	-1234	GAACCATGCCCAGTC	6.9	1.2e-04	-9.059	3.934	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1062	-1048	GCAATATGACATTTT	5.8	2.8e-04	-8.190	3.557	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1236	-1222	GTCCCATGCTTCTCC	4.6	6.5e-04	-7.346	3.190	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-872	-858	GTAACAAGNNNNNNN	4.2	8.5e-04	-7.072	3.071	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-306	-292	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-992	-978	GAACCATGCCCAGTA	6.5	1.6e-04	-8.728	3.791	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-980	-966	GTACCATGCTTCTCC	5.5	3.5e-04	-7.971	3.462	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-306	-292	GAAACATGTCTTTTT	9.9	7.1e-06	-11.852	5.147	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1420	-1406	AGAACATGACCTTTT	5.1	4.6e-04	-7.691	3.340	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-760	-746	AGAACATGACCTTTT	5.1	4.6e-04	-7.691	3.340	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-864	-850	GATGCATGACCTTCT	4.3	7.9e-04	-7.145	3.103	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-146	-132	GATACATGTAATTTT	5.2	4.3e-04	-7.755	3.368	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-318	-304	CATTCATCCCATTTA	4.7	6.1e-04	-7.407	3.217	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-71	-57	GAAACANNNNNNNAT	4.5	6.9e-04	-7.272	3.158	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-100	-86	ATAACTTGCCTTAAT	4.3	7.9e-04	-7.145	3.103	4	4
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-877	-863	GAAACATGACATTAG	7.7	5.9e-05	-9.730	4.226	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-165	-151	GTAACTTGCCATTTG	7.1	9.9e-05	-9.224	4.006	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-579	-565	NNNNNNNGCCGTTCG	5.7	3.0e-04	-8.116	3.525	3	3
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-431	-417	CGGACATGCCGGATC	4.7	6.1e-04	-7.407	3.217	4	4
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-756	-742	GACACTTGCCATTTT	7.2	9.1e-05	-9.300	4.039	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-491	-477	AAAACATGCCAAGGC	6.4	1.7e-04	-8.657	3.760	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-176	-162	GTAATTTGCCTTTTG	5.0	4.9e-04	-7.614	3.307	3	3
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-51	-37	TTTACATGCATTTAT	7.0	1.1e-04	-9.132	3.966	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-444	-430	AGGACATGTCATTGC	5.8	2.8e-04	-8.190	3.557	2	2
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	7	21	TACCCATACCATTTA	5.6	3.2e-04	-8.050	3.496	3	3
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1082	-1068	AATACAGGCATTTTC	4.5	6.9e-04	-7.272	3.158	4	4
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1133	-1119	ATAAAATGCCTATTT	4.2	8.5e-04	-7.072	3.071	5	5
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-46	-32	TTGGCATGCCATGAA	6.1	2.2e-04	-8.423	3.658	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-830	-816	AGATCATGCATGTAC	5.5	3.5e-04	-7.971	3.462	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	137	151	ACTCCATGCCCTTCA	5.5	3.5e-04	-7.971	3.462	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-43	-29	ATGGCATGCCAATTG	5.4	3.7e-04	-7.905	3.433	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	83	97	GTAGTAGGCATTTTT	4.3	7.9e-04	-7.145	3.103	5	5
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-329	-315	GACACATGTATTTCT	6.3	1.9e-04	-8.578	3.725	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-223	-209	TACTTATGCATTTTC	5.5	3.5e-04	-7.971	3.462	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-77	-63	GACCCATGCATAGAG	5.1	4.6e-04	-7.691	3.340	3	3
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1359	-1345	GACCTAGGCCTATTT	4.9	5.3e-04	-7.552	3.280	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-183	-169	TTAGCATGCTTTTTA	5.6	3.2e-04	-8.050	3.496	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-221	-207	CATGCATGCATTATT	4.1	9.0e-04	-7.013	3.046	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	73	87	TTAGCATGCTTTTTA	5.6	3.2e-04	-8.050	3.496	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	35	49	CATGCATGCATTATT	4.1	9.0e-04	-7.013	3.046	2	2
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-41	-27	GTGATATGCAATTGA	4.7	6.1e-04	-7.407	3.217	1	1
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1274	-1260	AGATCATGACATATA	4.3	7.9e-04	-7.145	3.103	2	2
;
; Matrices
;	matrix	name                            	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	15	4	1	-29.000	14.100	43.100	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                            	matches	scored
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	116	101144
;		TOTAL          	116	101144
; Host name	rsat
; Job started	2026-06-17.042536
; Job done	2026-06-17.042546
; Seconds	9.56
;	user	9.56
;	system	0.03
;	cuser	0.12
;	csystem	0.01