; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.050259_0xizxH.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.050259_Dq8A4v.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.050259_Dq8A4v.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.050259_0xizxH.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-136	-125	GAATCATGCCTT	7.5	7.8e-05	-9.464	4.110	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-133	-122	GGTCGATGACTC	5.4	5.2e-04	-7.563	3.285	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-806	-795	GAGCCANNNNNN	5.7	4.2e-04	-7.779	3.378	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1369	-1358	TGACCATGACAA	4.6	9.3e-04	-6.980	3.031	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-122	-111	GTTTCATGCCAC	7.5	7.8e-05	-9.464	4.110	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-845	-834	TGTCCATGCTAA	5.6	4.5e-04	-7.707	3.347	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-838	-827	GGACAATGCCAT	5.1	6.4e-04	-7.347	3.191	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-62	-51	GAAGCATGCCGC	8.8	2.2e-05	-10.735	4.662	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-105	-94	GATTCATGCCTT	7.7	6.3e-05	-9.670	4.200	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-62	-51	GCGGCATGCTTC	7.2	1.1e-04	-9.146	3.972	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-682	-671	ACACCATGACTA	5.5	4.9e-04	-7.628	3.313	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-745	-734	TAGCCATACATG	4.6	9.3e-04	-6.980	3.031	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-167	-156	CATACATACCCC	4.5	1.0e-03	-6.899	2.996	6	6
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	141	152	GAACCAAGCCCT	7.2	1.1e-04	-9.146	3.972	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-697	-686	NNNCCATGGCTT	6.7	1.8e-04	-8.642	3.753	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-697	-686	AAGCCATGGNNN	5.9	3.6e-04	-7.937	3.447	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-661	-650	CATACATACCCC	4.5	1.0e-03	-6.899	2.996	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1109	-1098	GACTCACGCCCT	5.6	4.5e-04	-7.707	3.347	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	167	178	GAGCGATGACGC	6.3	2.5e-04	-8.277	3.595	1	1
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-996	-985	ACGCCATGGCTA	7.7	6.3e-05	-9.670	4.200	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-996	-985	TAGCCATGGCGT	7.1	1.2e-04	-9.059	3.934	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-201	-190	GAAACATGCCAA	6.9	1.5e-04	-8.836	3.838	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1206	-1195	TGCACATGCCAA	5.5	4.9e-04	-7.628	3.313	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1017	-1006	GCCACATACCCG	5.1	6.4e-04	-7.347	3.191	5	5
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-153	-142	GTTACATGGCTT	4.9	7.5e-04	-7.198	3.126	6	6
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	136	147	GATGCATTCCCT	4.5	1.0e-03	-6.899	2.996	7	7
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-131	-120	GTCTCATGCCTT	7.0	1.3e-04	-8.941	3.883	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-71	-60	GTTCCAAGCCCA	6.5	2.2e-04	-8.445	3.668	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-313	-302	CCGGCTTGCCCG	6.4	2.3e-04	-8.369	3.634	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1209	-1198	GGTCGACGCCTA	5.9	3.6e-04	-7.937	3.447	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-313	-302	CGGGCAAGCCGG	5.5	4.9e-04	-7.628	3.313	5	5
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1381	-1370	ACTCGATGCATC	5.2	6.1e-04	-7.410	3.218	6	6
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-144	-133	TTCCCATGCTTT	4.9	7.5e-04	-7.198	3.126	7	7
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-436	-425	GATCGAGGCCAG	4.7	8.7e-04	-7.049	3.061	8	8
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1078	-1067	AGACCAAGGCCG	4.5	1.0e-03	-6.899	2.996	9	9
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	29	40	GCCCCATGCTGG	6.9	1.5e-04	-8.836	3.838	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	61	72	AGGACATGCCAA	6.7	1.8e-04	-8.642	3.753	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-706	-695	GAAGGATGCCGG	5.9	3.6e-04	-7.937	3.447	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-381	-370	GAGTCATGCTTT	5.6	4.5e-04	-7.707	3.347	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	36	47	TCGGCCTGCCCC	5.0	7.0e-04	-7.267	3.156	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-77	-66	GTCCCATGCCGG	9.8	6.6e-06	-11.933	5.183	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-52	-41	GTCCCATGCCTT	9.5	1.0e-05	-11.515	5.001	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-45	-34	GGGACATGCCGA	7.9	5.1e-05	-9.878	4.290	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1282	-1271	TGGCCATACCTT	5.8	3.9e-04	-7.854	3.411	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-925	-914	GATGCATGCTTA	5.7	4.2e-04	-7.779	3.378	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-693	-682	GAGTCATGCTTT	5.6	4.5e-04	-7.707	3.347	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1169	-1158	GTCCCATTCCGG	5.5	4.9e-04	-7.628	3.313	7	7
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-674	-663	TATACATGGCCG	5.5	4.9e-04	-7.628	3.313	8	8
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1320	-1309	GGGACATGACGG	5.2	6.1e-04	-7.410	3.218	9	9
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1245	-1234	GGCCCATCCCGT	5.2	6.1e-04	-7.410	3.218	10	10
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-925	-914	TAAGCATGCATC	5.1	6.4e-04	-7.347	3.191	11	11
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1312	-1301	GTCCCATCCCGT	4.8	8.1e-04	-7.122	3.093	12	12
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-45	-34	TCGGCATGTCCC	4.7	8.7e-04	-7.049	3.061	13	13
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1320	-1309	CCGTCATGTCCC	4.6	9.3e-04	-6.980	3.031	14	14
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-144	-133	CTTCCATTCCTT	4.6	9.3e-04	-6.980	3.031	15	15
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-115	-104	GTCCCATGCCTT	9.5	1.0e-05	-11.515	5.001	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-57	-46	GTTCCAAGCCCA	6.5	2.2e-04	-8.445	3.668	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	2	13	GTTTCATGCCTT	7.0	1.3e-04	-8.941	3.883	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	53	64	GAAGCACGCCGC	6.5	2.2e-04	-8.445	3.668	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-424	-413	CTACCTTGCCAA	5.3	5.6e-04	-7.490	3.253	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-234	-223	NNNNNNNGCCGC	5.1	6.4e-04	-7.347	3.191	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1486	-1475	CAACCATGCCTA	9.3	1.2e-05	-11.292	4.904	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1457	-1446	CAACCATGCCTA	9.3	1.2e-05	-11.292	4.904	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	23	34	TCACCATGCTTA	5.6	4.5e-04	-7.707	3.347	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1228	-1217	GAGTCATGACCT	5.4	5.2e-04	-7.563	3.285	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-506	-495	AGTGCATGCAAG	5.1	6.4e-04	-7.347	3.191	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-506	-495	CTTGCATGCACT	4.9	7.5e-04	-7.198	3.126	6	6
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-978	-967	GAACCATACTCC	4.6	9.3e-04	-6.980	3.031	7	7
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-883	-872	AGTCCATGCCTC	9.8	6.6e-06	-11.933	5.183	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-127	GAAGCATGCCAT	8.0	4.7e-05	-9.965	4.328	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-894	-883	GAACCATGCATA	7.7	6.3e-05	-9.670	4.200	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-301	-290	AAAACATGCCAG	6.6	1.9e-04	-8.549	3.713	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-138	-127	ATGGCATGCTTC	5.2	6.1e-04	-7.410	3.218	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-891	-880	AGTCCATGCCTC	9.8	6.6e-06	-11.933	5.183	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-138	-127	GAAGCATGCCAT	8.0	4.7e-05	-9.965	4.328	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-902	-891	GAACCATGCATA	7.7	6.3e-05	-9.670	4.200	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-296	-285	CAAACATGCCAG	7.0	1.3e-04	-8.941	3.883	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1060	-1049	TTTCCACGCCTC	6.6	1.9e-04	-8.549	3.713	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-955	-944	TGACCAAGCCTA	5.6	4.5e-04	-7.707	3.347	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-138	-127	ATGGCATGCTTC	5.2	6.1e-04	-7.410	3.218	7	7
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1391	-1380	GAACGATGACTT	4.7	8.7e-04	-7.049	3.061	8	8
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1248	-1237	GAACCATGCCCA	10.1	4.1e-06	-12.407	5.388	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1236	-1225	GTCCCATGCTTC	7.3	9.4e-05	-9.271	4.027	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-135	-124	TCACCATGCTTG	6.3	2.5e-04	-8.277	3.595	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	177	188	AGGCCATTCCTG	6.2	2.8e-04	-8.178	3.552	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-593	-582	CAACCAAGCCAA	5.4	5.2e-04	-7.563	3.285	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-992	-981	GAACCATGCCCA	10.1	4.1e-06	-12.407	5.388	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-980	-969	GTACCATGCTTC	7.7	6.3e-05	-9.670	4.200	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	177	188	AGGCCATTCCCG	6.7	1.8e-04	-8.642	3.753	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-145	-134	TCACCATGCTTG	6.3	2.5e-04	-8.277	3.595	4	4
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-804	-793	GAGCCTTGCCTC	8.8	2.2e-05	-10.735	4.662	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	177	188	AGGCCATTCCCG	6.7	1.8e-04	-8.642	3.753	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-145	-134	TCACCATGCTTG	6.3	2.5e-04	-8.277	3.595	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-864	-853	GATGCATGACCT	5.3	5.6e-04	-7.490	3.253	4	4
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-864	-853	AGGTCATGCATC	5.2	6.1e-04	-7.410	3.218	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-263	-252	GTTGCATGCCCC	8.7	2.4e-05	-10.639	4.620	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-17	-6	AATTCATGCCGG	6.6	1.9e-04	-8.549	3.713	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-263	-252	GGGGCATGCAAC	6.5	2.2e-04	-8.445	3.668	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-803	-792	CGGTCATGCTAT	5.0	7.0e-04	-7.267	3.156	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	128	139	ACTCCATTCCCT	5.0	7.0e-04	-7.267	3.156	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-803	-792	ATAGCATGACCG	4.8	8.1e-04	-7.122	3.093	6	6
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-183	-172	ATTACATGCATC	4.5	1.0e-03	-6.899	2.996	7	7
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-431	-420	CGGACATGCCGG	8.3	3.4e-05	-10.277	4.463	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-95	-84	CAACCATGCAAC	7.0	1.3e-04	-8.941	3.883	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-431	-420	CCGGCATGTCCG	5.7	4.2e-04	-7.779	3.378	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	136	147	ACTCCATGGCCT	6.6	1.9e-04	-8.549	3.713	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-491	-480	AAAACATGCCAA	5.5	4.9e-04	-7.628	3.313	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-486	-475	GAGCCTTGGCAT	5.2	6.1e-04	-7.410	3.218	3	3
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	7	18	TACCCATACCAT	5.0	7.0e-04	-7.267	3.156	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	140	151	ACTCCATGCCCT	9.3	1.2e-05	-11.292	4.904	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-43	-32	ATGGCATGCCAA	6.8	1.6e-04	-8.735	3.794	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-43	-32	TTGGCATGCCAT	6.7	1.8e-04	-8.642	3.753	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-831	-820	CGTACATGCATG	5.8	3.9e-04	-7.854	3.411	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-118	-107	GGTGCATGCACA	5.7	4.2e-04	-7.779	3.378	5	5
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-118	-107	TGTGCATGCACC	5.2	6.1e-04	-7.410	3.218	6	6
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-547	-536	GATACATGCTAA	5.1	6.4e-04	-7.347	3.191	7	7
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-1170	-1159	ACCCCATTCCCT	4.6	9.3e-04	-6.980	3.031	8	8
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-827	-816	AGATCATGCATG	4.6	9.3e-04	-6.980	3.031	9	9
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-77	-66	GACCCATGCATA	7.7	6.3e-05	-9.670	4.200	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-319	-308	GTGTCATGCGCG	6.4	2.3e-04	-8.369	3.634	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-754	-743	TCACCATGCTCA	5.6	4.5e-04	-7.707	3.347	3	3
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-319	-308	CGCGCATGACAC	5.2	6.1e-04	-7.410	3.218	4	4
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-1491	-1480	AATCCATCCCCA	4.5	1.0e-03	-6.899	2.996	5	5
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	6	17	CAACCATGGCCA	6.4	2.3e-04	-8.369	3.634	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-218	-207	AATGCATGCATG	5.4	5.2e-04	-7.563	3.285	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-662	-651	NNNNNACGCCTC	5.1	6.4e-04	-7.347	3.191	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-214	-203	AGTACATGCATG	5.1	6.4e-04	-7.347	3.191	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	-218	-207	CATGCATGCATT	5.0	7.0e-04	-7.267	3.156	5	5
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	38	49	AATGCATGCATG	5.4	5.2e-04	-7.563	3.285	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	42	53	AGTACATGCATG	5.1	6.4e-04	-7.347	3.191	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m10oligos_6-8nt_m10	R	38	49	CATGCATGCATT	5.0	7.0e-04	-7.267	3.156	3	3
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m10oligos_6-8nt_m10	D	-905	-894	CAGACATGCTTG	5.7	4.2e-04	-7.779	3.378	1	1
;
; Matrices
;	matrix	name                            	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	12	4	1	-21.300	12.500	33.800	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                            	matches	scored
;	1	oligos_6-8nt_m10oligos_6-8nt_m10	132	101336
;		TOTAL          	132	101336
; Host name	rsat
; Job started	2026-06-17.050259
; Job done	2026-06-17.050308
; Seconds	8.17
;	user	8.17
;	system	0.02
;	cuser	0.11
;	csystem	0.02