; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.060106_b9WIgf.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.060106_UmVAsq.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.060106_UmVAsq.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.060106_b9WIgf.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-137	-126	AATCATGCCTTT	9.4	1.2e-05	-11.319	4.916	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-642	-631	TAGCACGCGAAC	4.9	6.9e-04	-7.283	3.163	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-541	-530	AGTAATGCCAAA	4.4	1.0e-03	-6.899	2.996	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-121	-110	TTTCATGCCACT	8.7	4.1e-05	-10.105	4.389	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1402	-1391	AGTTATGCCAAT	6.5	1.9e-04	-8.584	3.728	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-77	-66	AGTCATTCCGAT	6.5	1.9e-04	-8.584	3.728	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1360	-1349	ATACATTCCTTT	4.7	8.1e-04	-7.120	3.092	4	4
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-151	-140	ATGCCTGCNNNN	4.7	8.1e-04	-7.120	3.092	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-106	-95	ATTCATGCCTTT	9.3	1.5e-05	-11.138	4.837	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-61	-50	AAGCATGCCGCT	9.3	1.5e-05	-11.138	4.837	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-377	-366	GATCATTCCATT	5.6	3.8e-04	-7.879	3.422	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-654	-643	GAGCATGACATT	4.4	1.0e-03	-6.899	2.996	4	4
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-693	-682	AATCAAGCCATG	7.1	1.3e-04	-8.943	3.884	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-321	-310	TATCATGNNNNN	6.1	2.5e-04	-8.304	3.606	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	3	14	AATTATGCCNNN	5.7	3.5e-04	-7.957	3.456	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	140	151	AACCAAGCCCTG	5.0	6.3e-04	-7.363	3.198	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	26	37	AGTCAAGCGAGG	4.8	7.5e-04	-7.196	3.125	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-240	-229	AAACATGCATTT	4.6	8.7e-04	-7.049	3.061	6	6
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1139	-1128	AGACATTCCTTA	4.5	9.4e-04	-6.967	3.026	7	7
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1108	-1097	ACTCACGCCCTT	7.5	1.1e-04	-9.141	3.970	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-419	-408	AATCAAGCCATC	6.2	2.3e-04	-8.377	3.638	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-312	-301	ATTCATGCAGAT	6.2	2.3e-04	-8.377	3.638	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	17	28	AATTATGCCTAT	6.2	2.3e-04	-8.377	3.638	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	40	51	AGTCAAGCNNNN	5.4	4.5e-04	-7.712	3.349	5	5
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-725	-714	AAGCATACCTNN	5.1	5.8e-04	-7.456	3.238	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-200	-189	AAACATGCCAAT	8.7	4.1e-05	-10.105	4.389	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1205	-1194	GCACATGCCAAT	8.0	7.9e-05	-9.446	4.103	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	135	146	ATGCATTCCCTT	4.5	9.4e-04	-6.967	3.026	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1000	-989	GTGTACGCCATG	4.4	1.0e-03	-6.899	2.996	4	4
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	9	20	GATCAAGCCTTG	6.3	2.1e-04	-8.455	3.672	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-132	-121	TCTCATGCCTTT	8.6	4.6e-05	-9.982	4.335	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-107	-96	ATTCACGCCAAA	8.0	7.9e-05	-9.446	4.103	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-312	-301	GGGCAAGCCGGA	6.4	2.0e-04	-8.524	3.702	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-123	-112	AGACAGGCCGAG	4.9	6.9e-04	-7.283	3.163	4	4
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-425	-414	GTACCCGCCAAG	4.5	9.4e-04	-6.967	3.026	5	5
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	78	89	ATTCACGCCGAA	8.6	4.6e-05	-9.982	4.335	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	62	73	GGACATGCCAAG	8.3	6.1e-05	-9.709	4.217	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-44	-33	GGACATGCCGAG	8.9	3.0e-05	-10.409	4.521	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-28	-17	ATTCACGCCGAA	8.6	4.6e-05	-9.982	4.335	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-78	-67	TCCCATGCCGGA	7.9	8.4e-05	-9.384	4.076	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-53	-42	TCCCATGCCTTT	7.5	1.1e-04	-9.141	3.970	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1219	-1208	TTTCATTCCGTC	4.6	8.7e-04	-7.049	3.061	5	5
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-91	-80	ATTCACGCCAAA	8.0	7.9e-05	-9.446	4.103	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-116	-105	TCCCATGCCTTT	7.5	1.1e-04	-9.141	3.970	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-790	-779	TGTCATTCCATA	5.5	4.1e-04	-7.791	3.384	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1349	-1338	GTACATGCAATA	4.8	7.5e-04	-7.196	3.125	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1096	-1085	GTACATGCAATA	4.8	7.5e-04	-7.196	3.125	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	1	12	TTTCATGCCTTT	8.9	3.0e-05	-10.409	4.521	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	54	65	AAGCACGCCGCT	8.3	6.1e-05	-9.709	4.217	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-233	-222	NNNNNNGCCGCT	5.3	4.9e-04	-7.625	3.311	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1485	-1474	AACCATGCCTAG	8.5	5.1e-05	-9.890	4.295	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1456	-1445	AACCATGCCTAG	8.5	5.1e-05	-9.890	4.295	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-507	-496	GTGCATGCAAGT	5.6	3.8e-04	-7.879	3.422	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-126	AAGCATGCCATA	9.4	1.2e-05	-11.319	4.916	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-300	-289	AAACATGCCAGT	9.1	2.2e-05	-10.711	4.652	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-882	-871	GTCCATGCCTCT	7.2	1.2e-04	-8.992	3.905	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-893	-882	AACCATGCATAG	4.7	8.1e-04	-7.120	3.092	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-788	-777	GTGTACGCCTAT	4.4	1.0e-03	-6.899	2.996	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-295	-284	AAACATGCCAGT	9.1	2.2e-05	-10.711	4.652	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-126	AAGCATGCCATC	8.6	4.6e-05	-9.982	4.335	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-890	-879	GTCCATGCCTCT	7.2	1.2e-04	-8.992	3.905	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1061	-1050	TTCCACGCCTCA	5.6	3.8e-04	-7.879	3.422	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-956	-945	GACCAAGCCTAA	5.1	5.8e-04	-7.456	3.238	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-901	-890	AACCATGCATAG	4.7	8.1e-04	-7.120	3.092	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-796	-785	GTGTACGCCTAT	4.4	1.0e-03	-6.899	2.996	7	7
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1247	-1236	AACCATGCCCAG	7.5	1.1e-04	-9.141	3.970	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1389	-1378	AGTTATGCCAGA	6.4	2.0e-04	-8.524	3.702	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-592	-581	AACCAAGCCAAT	6.1	2.5e-04	-8.304	3.606	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1261	-1250	TGTTATGCCACT	5.5	4.1e-04	-7.791	3.384	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-991	-980	AACCATGCCCAG	7.5	1.1e-04	-9.141	3.970	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1005	-994	TGTTATGCCACG	5.6	3.8e-04	-7.879	3.422	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-108	-97	TGTCATTCCTTT	5.2	5.4e-04	-7.532	3.271	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-108	-97	TGTCATTCCTTT	5.2	5.4e-04	-7.532	3.271	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-779	-768	TGTCACACCGGG	4.4	1.0e-03	-6.899	2.996	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-18	-7	ATTCATGCCGGG	9.8	4.2e-06	-12.390	5.381	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-262	-251	TTGCATGCCCCA	6.6	1.7e-04	-8.653	3.758	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-430	-419	GGACATGCCGGA	8.7	4.1e-05	-10.105	4.389	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-578	-567	NNNNNNGCCGTT	6.0	2.7e-04	-8.204	3.563	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1028	-1017	ACTCATGCAGGG	5.4	4.5e-04	-7.712	3.349	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-490	-479	AAACATGCCAAG	8.5	5.1e-05	-9.890	4.295	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	105	116	TGACATTCCATG	4.7	8.1e-04	-7.120	3.092	2	2
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-435	-424	TGTCCTGCCTAA	6.1	2.5e-04	-8.304	3.606	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-132	-121	AATCATGCGGCA	5.7	3.5e-04	-7.957	3.456	2	2
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	8	19	ACCCATACCATT	4.7	8.1e-04	-7.120	3.092	3	3
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-49	-38	TTACATGCATTT	4.5	9.4e-04	-6.967	3.026	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-44	-33	TGGCATGCCATG	9.2	1.8e-05	-10.904	4.736	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-42	-31	TGGCATGCCAAT	9.2	1.8e-05	-10.904	4.736	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1137	-1126	TCTCACGCCCAG	6.7	1.7e-04	-8.707	3.781	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-828	-817	GATCATGCATGT	5.7	3.5e-04	-7.957	3.456	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	139	150	CTCCATGCCCTT	5.7	3.5e-04	-7.957	3.456	5	5
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-546	-535	ATACATGCTAAT	4.4	1.0e-03	-6.899	2.996	6	6
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-119	-108	GTGCATGCACAT	4.4	1.0e-03	-6.899	2.996	7	7
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-318	-307	TGTCATGCGCGT	6.7	1.7e-04	-8.707	3.781	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-987	-976	TTTCATTCCTTT	4.8	7.5e-04	-7.196	3.125	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1292	-1281	ACTTATGCCACA	4.6	8.7e-04	-7.049	3.061	3	3
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-314	-303	ATACACGCGCAT	4.6	8.7e-04	-7.049	3.061	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-19	-8	AATCATACCAGA	5.9	3.0e-04	-8.126	3.529	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-217	-206	ATGCATGCATGT	5.6	3.8e-04	-7.879	3.422	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-219	-208	ATGCATGCATTA	5.1	5.8e-04	-7.456	3.238	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-179	-168	AAGCATGCTAAT	4.8	7.5e-04	-7.196	3.125	4	4
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	39	50	ATGCATGCATGT	5.6	3.8e-04	-7.879	3.422	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	37	48	ATGCATGCATTA	5.1	5.8e-04	-7.456	3.238	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	77	88	AAGCATGCTAAT	4.8	7.5e-04	-7.196	3.125	3	3
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1273	-1262	GATCATGACATA	4.4	1.0e-03	-6.899	2.996	1	1
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	12	4	1	-26.500	10.700	37.200	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	104	101336
;		TOTAL          	104	101336
; Host name	rsat
; Job started	2026-06-17.060106
; Job done	2026-06-17.060114
; Seconds	8
;	user	8
;	system	0.01
;	cuser	0.11
;	csystem	0.01