; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.062610_JpKp9y.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 5 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.062610_EzeW7d.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.062610_EzeW7d.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.062610_JpKp9y.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	5    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-137	-126	AATCATGCCTTT	9.8	5.3e-06	-12.155	5.279	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-637	-626	GCTCAGGCCGAA	5.8	3.9e-04	-7.844	3.406	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-121	-110	TTTCATGCCACT	8.6	3.2e-05	-10.338	4.490	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-890	-879	TCTCATGCTTGT	6.8	1.7e-04	-8.689	3.773	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-106	-95	ATTCATGCCTTT	10.0	2.6e-06	-12.847	5.579	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-61	-50	AAGCATGCCGCT	7.9	6.5e-05	-9.636	4.185	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-63	-52	CGGCATGCTTCG	6.3	2.5e-04	-8.291	3.601	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-652	-641	TGTCATGCTCTT	5.8	3.9e-04	-7.844	3.406	4	4
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	161	172	AATGATGCCTCT	6.0	3.3e-04	-8.027	3.486	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-321	-310	TATCATGNNNNN	5.9	3.5e-04	-7.945	3.450	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-240	-229	AAACATGCATTT	5.4	5.6e-04	-7.489	3.252	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1041	-1030	GTTCATCCCTTC	5.3	6.1e-04	-7.403	3.215	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-693	-682	AATCAAGCCATG	5.2	6.7e-04	-7.309	3.174	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-696	-685	NNCCATGGCTTG	5.1	7.2e-04	-7.234	3.142	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	3	14	AATTATGCCNNN	5.0	7.9e-04	-7.149	3.105	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1108	-1097	ACTCACGCCCTT	7.0	1.4e-04	-8.867	3.851	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-312	-301	ATTCATGCAGAT	5.9	3.5e-04	-7.945	3.450	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	17	28	AATTATGCCTAT	5.6	4.7e-04	-7.671	3.331	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-419	-408	AATCAAGCCATC	5.0	7.9e-04	-7.149	3.105	4	4
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-166	-155	TCTCATGCATCC	6.6	2.0e-04	-8.528	3.704	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-65	-54	TCTCATGCATCC	6.6	2.0e-04	-8.528	3.704	2	2
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1205	-1194	GCACATGCCAAT	6.9	1.5e-04	-8.788	3.817	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-200	-189	AAACATGCCAAT	6.5	2.2e-04	-8.441	3.666	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-711	-700	CTTCAAGCCTAA	5.6	4.7e-04	-7.671	3.331	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-995	-984	CGCCATGGCTAC	5.4	5.6e-04	-7.489	3.252	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-997	-986	AGCCATGGCGTA	5.3	6.1e-04	-7.403	3.215	5	5
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	9	20	GATCAAGCCTTG	6.2	2.7e-04	-8.203	3.563	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1164	-1153	ACACATGCATTA	5.9	3.5e-04	-7.945	3.450	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-132	-121	TCTCATGCCTTT	9.7	6.8e-06	-11.905	5.170	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-107	-96	ATTCACGCCAAA	6.2	2.7e-04	-8.203	3.563	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-145	-134	TCCCATGCTTTT	5.5	5.2e-04	-7.570	3.288	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-380	-369	AGTCATGCTTTG	7.4	9.8e-05	-9.233	4.010	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	62	73	GGACATGCCAAG	6.8	1.7e-04	-8.689	3.773	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	78	89	ATTCACGCCGAA	6.7	1.8e-04	-8.602	3.736	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-53	-42	TCCCATGCCTTT	8.3	4.5e-05	-10.013	4.349	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-692	-681	AGTCATGCTTTG	7.4	9.8e-05	-9.233	4.010	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-44	-33	GGACATGCCGAG	7.3	1.1e-04	-9.146	3.972	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-78	-67	TCCCATGCCGGA	7.2	1.2e-04	-9.051	3.931	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-28	-17	ATTCACGCCGAA	6.7	1.8e-04	-8.602	3.736	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-924	-913	ATGCATGCTTAT	5.6	4.7e-04	-7.671	3.331	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-926	-915	AAGCATGCATCA	5.5	5.2e-04	-7.570	3.288	7	7
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-116	-105	TCCCATGCCTTT	8.3	4.5e-05	-10.013	4.349	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-91	-80	ATTCACGCCAAA	6.2	2.7e-04	-8.203	3.563	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1349	-1338	GTACATGCAATA	5.1	7.2e-04	-7.234	3.142	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1096	-1085	GTACATGCAATA	5.1	7.2e-04	-7.234	3.142	4	4
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	1	12	TTTCATGCCTTT	9.4	1.1e-05	-11.376	4.941	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	54	65	AAGCACGCCGCT	6.1	3.0e-04	-8.124	3.528	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-233	-222	NNNNNNGCCGCT	5.1	7.2e-04	-7.234	3.142	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1485	-1474	AACCATGCCTAG	8.2	5.0e-05	-9.907	4.303	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1456	-1445	AACCATGCCTAG	8.2	5.0e-05	-9.907	4.303	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1229	-1218	GGTCATGACTCA	6.0	3.3e-04	-8.027	3.486	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	22	33	CACCATGCTTAT	5.4	5.6e-04	-7.489	3.252	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1473	-1462	TCTCACGCTTCT	5.1	7.2e-04	-7.234	3.142	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1227	-1216	AGTCATGACCTT	5.1	7.2e-04	-7.234	3.142	6	6
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-882	-871	GTCCATGCCTCT	8.9	2.2e-05	-10.739	4.664	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-137	-126	AAGCATGCCATA	7.6	8.3e-05	-9.393	4.079	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-300	-289	AAACATGCCAGT	7.1	1.3e-04	-8.970	3.896	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-139	-128	TGGCATGCTTCG	5.7	4.3e-04	-7.749	3.366	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-893	-882	AACCATGCATAG	5.5	5.2e-04	-7.570	3.288	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-890	-879	GTCCATGCCTCT	8.9	2.2e-05	-10.739	4.664	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-137	-126	AAGCATGCCATC	7.2	1.2e-04	-9.051	3.931	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-295	-284	AAACATGCCAGT	7.1	1.3e-04	-8.970	3.896	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1061	-1050	TTCCACGCCTCA	6.2	2.7e-04	-8.203	3.563	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-495	-484	ATTCATGACTCA	5.9	3.5e-04	-7.945	3.450	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-139	-128	TGGCATGCTTCG	5.7	4.3e-04	-7.749	3.366	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-901	-890	AACCATGCATAG	5.5	5.2e-04	-7.570	3.288	7	7
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1247	-1236	AACCATGCCCAG	6.4	2.3e-04	-8.369	3.635	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-540	-529	ATTCATGACTCA	5.9	3.5e-04	-7.945	3.450	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1235	-1224	TCCCATGCTTCT	5.6	4.7e-04	-7.671	3.331	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-136	-125	CACCATGCTTGT	5.6	4.7e-04	-7.671	3.331	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1389	-1378	AGTTATGCCAGA	5.3	6.1e-04	-7.403	3.215	5	5
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1261	-1250	TGTTATGCCACT	5.1	7.2e-04	-7.234	3.142	6	6
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-991	-980	AACCATGCCCAG	6.4	2.3e-04	-8.369	3.635	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-550	-539	ATTCATGACTCA	5.9	3.5e-04	-7.945	3.450	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-979	-968	TACCATGCTTCT	5.8	3.9e-04	-7.844	3.406	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-146	-135	CACCATGCTTGT	5.6	4.7e-04	-7.671	3.331	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-108	-97	TGTCATTCCTTT	5.3	6.1e-04	-7.403	3.215	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1005	-994	TGTTATGCCACG	5.2	6.7e-04	-7.309	3.174	6	6
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-865	-854	GGTCATGCATCC	7.1	1.3e-04	-8.970	3.896	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-803	-792	AGCCTTGCCTCA	6.1	3.0e-04	-8.124	3.528	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-146	-135	CACCATGCTTGT	5.6	4.7e-04	-7.671	3.331	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-108	-97	TGTCATTCCTTT	5.3	6.1e-04	-7.403	3.215	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-18	-7	ATTCATGCCGGG	8.7	2.8e-05	-10.471	4.548	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-804	-793	GGTCATGCTATC	6.5	2.2e-04	-8.441	3.666	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-262	-251	TTGCATGCCCCA	6.3	2.5e-04	-8.291	3.601	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-175	-164	CATCATGCGGGC	5.5	5.2e-04	-7.570	3.288	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-182	-171	TTACATGCATCA	5.3	6.1e-04	-7.403	3.215	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-98	-87	TAACTTGCCTTA	5.0	7.9e-04	-7.149	3.105	6	6
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-430	-419	GGACATGCCGGA	7.5	9.1e-05	-9.305	4.041	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1028	-1017	ACTCATGCAGGG	5.9	3.5e-04	-7.945	3.450	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-578	-567	NNNNNNGCCGTT	5.0	7.9e-04	-7.149	3.105	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-91	-80	TCTCATGCTTTC	6.5	2.2e-04	-8.441	3.666	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-490	-479	AAACATGCCAAG	6.3	2.5e-04	-8.291	3.601	2	2
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-132	-121	AATCATGCGGCA	6.2	2.7e-04	-8.203	3.563	1	1
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-49	-38	TTACATGCATTT	5.4	5.6e-04	-7.489	3.252	2	2
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1417	-1406	GCTCATTCCTCC	5.2	6.7e-04	-7.309	3.174	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-828	-817	GATCATGCATGT	7.2	1.2e-04	-9.051	3.931	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-44	-33	TGGCATGCCATG	7.2	1.2e-04	-9.051	3.931	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	139	150	CTCCATGCCCTT	7.2	1.2e-04	-9.051	3.931	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-42	-31	TGGCATGCCAAT	6.7	1.8e-04	-8.602	3.736	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-830	-819	GTACATGCATGA	5.7	4.3e-04	-7.749	3.366	5	5
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1137	-1126	TCTCACGCCCAG	5.6	4.7e-04	-7.671	3.331	6	6
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-318	-307	TGTCATGCGCGT	6.5	2.2e-04	-8.441	3.666	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-76	-65	ACCCATGCATAG	5.8	3.9e-04	-7.844	3.406	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-1292	-1281	ACTTATGCCACA	5.1	7.2e-04	-7.234	3.142	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-219	-208	ATGCATGCATTA	6.0	3.3e-04	-8.027	3.486	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-217	-206	ATGCATGCATGT	5.9	3.5e-04	-7.945	3.450	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-215	-204	GTACATGCATGC	5.6	4.7e-04	-7.671	3.331	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-663	-652	NNNNACGCCTCC	5.4	5.6e-04	-7.489	3.252	4	4
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	-181	-170	TAGCATGCTTTT	5.4	5.6e-04	-7.489	3.252	5	5
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	37	48	ATGCATGCATTA	6.0	3.3e-04	-8.027	3.486	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	39	50	ATGCATGCATGT	5.9	3.5e-04	-7.945	3.450	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	41	52	GTACATGCATGC	5.6	4.7e-04	-7.671	3.331	3	3
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	R	75	86	TAGCATGCTTTT	5.4	5.6e-04	-7.489	3.252	4	4
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-904	-893	AGACATGCTTGA	5.9	3.5e-04	-7.945	3.450	1	1
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	D	-1273	-1262	GATCATGACATA	5.2	6.7e-04	-7.309	3.174	2	2
;
; Matrices
;	matrix	name                                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	12	4	1	-21.700	10.800	32.500	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                                      	matches	scored
;	1	dyads_test_vs_ctrl_m2dyads_test_vs_ctrl_m2	116	101336
;		TOTAL          	116	101336
; Host name	rsat
; Job started	2026-06-17.062610
; Job done	2026-06-17.062619
; Seconds	8.1
;	user	8.1
;	system	0.02
;	cuser	0.09
;	csystem	0.03