; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.094555_cqUux2.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.094555_esvhvw.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.094555_esvhvw.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.094555_cqUux2.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34242
;		c	0.18661
;		g	0.15145
;		t	0.31953
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-139	-126	AATCATGCCTTTTA	11.3	1.0e-06	-13.817	6.001	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1345	-1332	TATGATGCAATTTT	4.1	9.9e-04	-6.921	3.006	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1033	-1020	TAACATGTCACTTA	4.3	8.7e-04	-7.050	3.062	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-121	-108	TTTCATGCCACTAC	9.5	1.1e-05	-11.385	4.945	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-890	-877	TCTCATGCTTGTTT	6.0	2.7e-04	-8.229	3.574	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1362	-1349	ATACATTCCTTTCA	4.1	9.9e-04	-6.921	3.006	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-108	-95	ATTCATGCCTTTGT	10.0	6.5e-06	-11.941	5.186	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-61	-48	AAGCATGCCGCTGA	5.9	2.9e-04	-8.162	3.545	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-652	-639	TGTCATGCTCTTAT	5.7	3.3e-04	-8.007	3.477	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-656	-643	GAGCATGACATTAT	5.3	4.4e-04	-7.728	3.356	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1453	-1440	TTTCATGGTTCTAG	4.2	9.3e-04	-6.979	3.031	5	5
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	161	174	AATGATGCCTCTCC	8.1	4.6e-05	-9.983	4.336	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-242	-229	AAACATGCATTTAC	8.1	4.6e-05	-9.983	4.336	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-696	-683	NNCCATGGCTTGAT	7.1	1.1e-04	-9.113	3.958	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	1	14	AATTATGCCNNNNN	6.7	1.5e-04	-8.772	3.810	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-323	-310	TATCATGNNNNNNN	6.5	1.8e-04	-8.615	3.741	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1041	-1028	GTTCATCCCTTCTT	4.2	9.3e-04	-6.979	3.031	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-695	-682	AATCAAGCCATGGN	4.1	9.9e-04	-6.921	3.006	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	15	28	AATTATGCCTATAT	6.9	1.3e-04	-8.945	3.885	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1108	-1095	ACTCACGCCCTTTA	6.5	1.8e-04	-8.615	3.741	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-421	-408	AATCAAGCCATCCT	5.8	3.1e-04	-8.081	3.510	3	3
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-65	-52	TCTCATGCATCCAC	6.3	2.1e-04	-8.468	3.677	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-166	-153	TCTCATGCATCCGA	4.2	9.3e-04	-6.979	3.031	2	2
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-156	-143	TTACATGGCTTTTG	8.0	5.1e-05	-9.890	4.295	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1205	-1192	GCACATGCCAATAC	7.1	1.1e-04	-9.113	3.958	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-200	-187	AAACATGCCAATAT	6.7	1.5e-04	-8.772	3.810	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-995	-982	CGCCATGGCTACCG	4.2	9.3e-04	-6.979	3.031	4	4
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	7	20	GATCAAGCCTTGAT	6.5	1.8e-04	-8.615	3.741	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1166	-1153	ACACATGCATTACT	5.1	5.1e-04	-7.589	3.296	2	2
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	6	19	TATCAAGGCTTGAT	4.9	5.8e-04	-7.451	3.236	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-134	-121	TCTCATGCCTTTTT	11.6	5.3e-07	-14.452	6.276	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-147	-134	TCCCATGCTTTTTC	8.4	3.4e-05	-10.276	4.463	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-497	-484	CATCTCGCCTTTCC	6.0	2.7e-04	-8.229	3.574	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	109	122	GTCTTTGCCTTTCC	4.5	7.7e-04	-7.174	3.116	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	51	64	TCCTATGCCTTTAA	7.4	8.5e-05	-9.369	4.069	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-380	-367	AGTCATGCTTTGAC	7.1	1.1e-04	-9.113	3.958	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-384	-371	AAGCATGACTCTAA	4.7	6.7e-04	-7.308	3.174	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	86	99	GAATATGGCACTCC	4.2	9.3e-04	-6.979	3.031	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-55	-42	TCCCATGCCTTTAA	9.7	9.2e-06	-11.597	5.037	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-692	-679	AGTCATGCTTTGAC	7.1	1.1e-04	-9.113	3.958	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-696	-683	AAGCATGACTCTAG	5.1	5.1e-04	-7.589	3.296	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-20	-7	GAATATGGCACTCC	4.2	9.3e-04	-6.979	3.031	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-118	-105	TCCCATGCCTTTAC	11.4	7.9e-07	-14.054	6.103	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1296	-1283	TTACATGTCGTTTT	5.2	4.8e-04	-7.650	3.322	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1043	-1030	TTACATGTCGTTTT	5.2	4.8e-04	-7.650	3.322	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	129	142	GTCTTTGCCTTTCC	4.5	7.7e-04	-7.174	3.116	4	4
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	146	159	GGTTATGCTTTGTC	4.3	8.7e-04	-7.050	3.062	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1	12	TTTCATGCCTTTCC	11.6	5.3e-07	-14.452	6.276	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-233	-220	NNNNNNGCCGCTAN	4.7	6.7e-04	-7.308	3.174	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1501	199	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1485	-1472	AACCATGCCTAGTC	8.3	3.8e-05	-10.181	4.421	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1456	-1443	AACCATGCCTAGTC	8.3	3.8e-05	-10.181	4.421	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	20	33	CACCATGCTTATAC	6.2	2.3e-04	-8.382	3.640	3	3
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1473	-1460	TCTCACGCTTCTCC	5.4	4.1e-04	-7.798	3.387	4	4
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1227	-1214	AGTCATGACCTTCC	5.4	4.1e-04	-7.798	3.387	5	5
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	32	45	CACTATGGCTCTCA	4.4	8.1e-04	-7.116	3.090	6	6
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1448	199	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-882	-869	GTCCATGCCTCTCC	9.7	9.2e-06	-11.597	5.037	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-300	-287	AAACATGCCAGTTT	7.0	1.2e-04	-9.020	3.917	2	2
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-124	AAGCATGCCATATA	6.6	1.7e-04	-8.701	3.779	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-141	-128	TGGCATGCTTCGTC	5.1	5.1e-04	-7.589	3.296	4	4
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-893	-880	AACCATGCATAGTC	4.9	5.8e-04	-7.451	3.236	5	5
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-743	-730	ATATATGTCTTTAT	4.5	7.7e-04	-7.174	3.116	6	6
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	69	82	CTTTACGCCATTGC	4.1	9.9e-04	-6.921	3.006	7	7
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-890	-877	GTCCATGCCTCTCC	9.7	9.2e-06	-11.597	5.037	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-137	-124	AAGCATGCCATCTA	7.9	5.5e-05	-9.810	4.260	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-295	-282	AAACATGCCAGTTT	7.0	1.2e-04	-9.020	3.917	3	3
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-141	-128	TGGCATGCTTCGTC	5.1	5.1e-04	-7.589	3.296	4	4
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-901	-888	AACCATGCATAGTC	4.9	5.8e-04	-7.451	3.236	5	5
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-754	-741	GAATATGTCTTTAT	4.2	9.3e-04	-6.979	3.031	6	6
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	69	82	CTTTACGCCATTGC	4.1	9.9e-04	-6.921	3.006	7	7
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1501	199	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1235	-1222	TCCCATGCTTCTCC	7.2	1.0e-04	-9.188	3.990	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-295	-282	AAACATGTCTTTTT	6.9	1.3e-04	-8.945	3.885	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-138	-125	CACCATGCTTGTTC	6.0	2.7e-04	-8.229	3.574	3	3
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1247	-1234	AACCATGCCCAGTC	5.7	3.3e-04	-8.007	3.477	4	4
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	69	82	CTTTACGCCGTTTC	5.2	4.8e-04	-7.650	3.322	5	5
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1263	-1250	TGTTATGCCACTCA	4.8	6.3e-04	-7.376	3.203	6	6
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1459	199	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-979	-966	TACCATGCTTCTCC	7.8	6.1e-05	-9.707	4.216	1	1
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-305	-292	AAACATGTCTTTTT	6.9	1.3e-04	-8.945	3.885	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-148	-135	CACCATGCTTGTTC	6.0	2.7e-04	-8.229	3.574	3	3
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	69	82	CTTTACGCCGTTTC	5.2	4.8e-04	-7.650	3.322	4	4
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-108	-95	TGTCATTCCTTTCT	4.8	6.3e-04	-7.376	3.203	5	5
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-991	-978	AACCATGCCCAGTA	4.5	7.7e-04	-7.174	3.116	6	6
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1426	199	.	0	0	0	0
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-305	-292	AAACATGTCTTTTT	6.9	1.3e-04	-8.945	3.885	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-148	-135	CACCATGCTTGTTC	6.0	2.7e-04	-8.229	3.574	2	2
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	69	82	CTTTACGCCGTTTC	5.2	4.8e-04	-7.650	3.322	3	3
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-108	-95	TGTCATTCCTTTCT	4.8	6.3e-04	-7.376	3.203	4	4
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-1419	-1406	GAACATGACCTTTT	4.7	6.7e-04	-7.308	3.174	5	5
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-759	-746	GAACATGACCTTTT	4.7	6.7e-04	-7.308	3.174	6	6
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-863	-850	ATGCATGACCTTCT	4.2	9.3e-04	-6.979	3.031	7	7
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-867	-854	GGTCATGCATCCTG	4.1	9.9e-04	-6.921	3.006	8	8
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1501	199	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-100	-87	TAACTTGCCTTAAT	4.9	5.8e-04	-7.451	3.236	1	1
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-20	-7	ATTCATGCCGGGCA	4.6	7.1e-04	-7.249	3.148	2	2
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-388	-375	NNNNNNNCCTCTTT	4.5	7.7e-04	-7.174	3.116	3	3
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-806	-793	GGTCATGCTATCCA	4.2	9.3e-04	-6.979	3.031	4	4
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-525	-512	ACCCATTCCTTTCA	4.1	9.9e-04	-6.921	3.006	5	5
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	74	87	TAACATGGCACCAA	4.1	9.9e-04	-6.921	3.006	6	6
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1501	199	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-164	-151	TAACTTGCCATTTG	5.8	3.1e-04	-8.081	3.510	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-578	-565	NNNNNNGCCGTTCG	5.6	3.6e-04	-7.942	3.449	2	2
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-876	-863	AAACATGACATTAG	5.2	4.8e-04	-7.650	3.322	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	limit	START_END	D	-1501	199	.	0	0	0	0
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-93	-80	TCTCATGCTTTCCT	7.4	8.5e-05	-9.369	4.069	1	1
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-756	-743	ACACTTGCCATTTT	6.1	2.4e-04	-8.315	3.611	2	2
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	133	146	CTCCATGGCCTTCA	5.1	5.1e-04	-7.589	3.296	3	3
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-490	-477	AAACATGCCAAGGC	4.7	6.7e-04	-7.308	3.174	4	4
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-710	-697	TTTCTTGGCTCTAT	4.5	7.7e-04	-7.174	3.116	5	5
107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-176	-163	TAATTTGCCTTTTG	4.2	9.3e-04	-6.979	3.031	6	6
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	limit	START_END	D	-1501	199	.	0	0	0	0
107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-51	-38	TTACATGCATTTAT	7.2	1.0e-04	-9.188	3.990	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	limit	START_END	D	-1501	199	.	0	0	0	0
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	137	150	CTCCATGCCCTTCA	7.2	1.0e-04	-9.188	3.990	1	1
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-47	-34	TTTCATGGCATGCC	7.1	1.1e-04	-9.113	3.958	2	2
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-830	-817	GATCATGCATGTAC	6.3	2.1e-04	-8.468	3.677	3	3
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-46	-33	TGGCATGCCATGAA	5.6	3.6e-04	-7.942	3.449	4	4
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-42	-29	TGGCATGCCAATTG	4.7	6.7e-04	-7.308	3.174	5	5
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-546	-533	ATACATGCTAATAT	4.2	9.3e-04	-6.979	3.031	6	6
107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1264	-1251	CACTTTGCCTTTTA	4.1	9.9e-04	-6.921	3.006	7	7
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	limit	START_END	D	-1501	199	.	0	0	0	0
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-222	-209	ACTTATGCATTTTC	6.6	1.7e-04	-8.701	3.779	1	1
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-1294	-1281	ACTTATGCCACATT	4.3	8.7e-04	-7.050	3.062	2	2
107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-989	-976	TTTCATTCCTTTCA	4.3	8.7e-04	-7.050	3.062	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-773	199	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-183	-170	TAGCATGCTTTTTA	7.3	9.3e-05	-9.282	4.031	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	-217	-204	ATGCATGCATGTAC	5.0	5.5e-04	-7.511	3.262	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-221	-208	ATGCATGCATTATT	4.6	7.1e-04	-7.249	3.148	3	3
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	-665	-652	NNNNACGCCTCCAT	4.3	8.7e-04	-7.050	3.062	4	4
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-233	199	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	73	86	TAGCATGCTTTTTA	7.3	9.3e-05	-9.282	4.031	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	D	39	52	ATGCATGCATGTAC	5.0	5.5e-04	-7.511	3.262	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	35	48	ATGCATGCATTATT	4.6	7.1e-04	-7.249	3.148	3	3
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1501	199	.	0	0	0	0
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	site	oligos_6-8nt_m2oligos_6-8nt_m2	R	57	70	CTTTACGCCATTTC	5.5	3.9e-04	-7.862	3.414	1	1
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	14	4	1	-30.400	13.200	43.600	a:0.342 c:0.187 g:0.151 t:0.320 
; Number of sequences scanned	32
; Sum of sequence lengths	51020
; N residues           	10767
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m2oligos_6-8nt_m2	123	101208
;		TOTAL          	123	101208
; Host name	rsat
; Job started	2026-06-17.094556
; Job done	2026-06-17.094605
; Seconds	9.14
;	user	9.14
;	system	0.02
;	cuser	0.1
;	csystem	0.02