; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.095054_h95hpq.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.095054_vac7Of.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.095054_vac7Of.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/17/matrix-scan_2026-06-17.095054_h95hpq.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.34010 ; c 0.18996 ; g 0.15460 ; t 0.31534 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1485 -1472 AACCATGCCTAGTC 8.3 3.7e-05 -10.192 4.427 1 1 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1456 -1443 AACCATGCCTAGTC 8.3 3.7e-05 -10.192 4.427 2 2 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 R 20 33 CACCATGCTTATAC 6.2 2.3e-04 -8.383 3.641 3 3 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1473 -1460 TCTCACGCTTCTCC 5.4 4.1e-04 -7.800 3.387 4 4 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1227 -1214 AGTCATGACCTTCC 5.3 4.4e-04 -7.729 3.357 5 5 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m2oligos_6-8nt_m2 R 32 45 CACTATGGCTCTCA 4.4 8.1e-04 -7.117 3.091 6 6 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -882 -869 GTCCATGCCTCTCC 9.6 1.0e-05 -11.497 4.993 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -300 -287 AAACATGCCAGTTT 6.9 1.3e-04 -8.948 3.886 2 2 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -124 AAGCATGCCATATA 6.7 1.5e-04 -8.776 3.811 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 R -141 -128 TGGCATGCTTCGTC 5.1 5.1e-04 -7.590 3.296 4 4 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 D -893 -880 AACCATGCATAGTC 5.0 5.5e-04 -7.514 3.263 5 5 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m2oligos_6-8nt_m2 R -743 -730 ATATATGTCTTTAT 4.7 6.7e-04 -7.310 3.175 6 6 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -890 -877 GTCCATGCCTCTCC 9.6 1.0e-05 -11.497 4.993 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -137 -124 AAGCATGCCATCTA 7.9 5.4e-05 -9.819 4.264 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -295 -282 AAACATGCCAGTTT 6.9 1.3e-04 -8.948 3.886 3 3 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 R -141 -128 TGGCATGCTTCGTC 5.1 5.1e-04 -7.590 3.296 4 4 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 D -901 -888 AACCATGCATAGTC 5.0 5.5e-04 -7.514 3.263 5 5 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m2oligos_6-8nt_m2 R -754 -741 GAATATGTCTTTAT 4.3 8.7e-04 -7.052 3.063 6 6 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1235 -1222 TCCCATGCTTCTCC 7.0 1.2e-04 -9.022 3.918 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -295 -282 AAACATGTCTTTTT 6.9 1.3e-04 -8.948 3.886 2 2 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 R -138 -125 CACCATGCTTGTTC 6.0 2.7e-04 -8.233 3.575 3 3 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1247 -1234 AACCATGCCCAGTC 5.7 3.3e-04 -8.008 3.478 4 4 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 R 69 82 CTTTACGCCGTTTC 5.2 4.7e-04 -7.652 3.323 5 5 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1263 -1250 TGTTATGCCACTCA 4.9 5.8e-04 -7.452 3.237 6 6 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -979 -966 TACCATGCTTCTCC 7.7 6.6e-05 -9.628 4.181 1 1 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -305 -292 AAACATGTCTTTTT 6.9 1.3e-04 -8.948 3.886 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 R -148 -135 CACCATGCTTGTTC 6.0 2.7e-04 -8.233 3.575 3 3 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 R 69 82 CTTTACGCCGTTTC 5.2 4.7e-04 -7.652 3.323 4 4 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -95 TGTCATTCCTTTCT 4.7 6.7e-04 -7.310 3.175 5 5 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m2oligos_6-8nt_m2 D -991 -978 AACCATGCCCAGTA 4.4 8.1e-04 -7.117 3.091 6 6 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -305 -292 AAACATGTCTTTTT 6.9 1.3e-04 -8.948 3.886 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -148 -135 CACCATGCTTGTTC 6.0 2.7e-04 -8.233 3.575 2 2 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R 69 82 CTTTACGCCGTTTC 5.2 4.7e-04 -7.652 3.323 3 3 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -108 -95 TGTCATTCCTTTCT 4.7 6.7e-04 -7.310 3.175 4 4 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -1419 -1406 GAACATGACCTTTT 4.5 7.6e-04 -7.176 3.117 5 5 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -759 -746 GAACATGACCTTTT 4.5 7.6e-04 -7.176 3.117 6 6 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -867 -854 GGTCATGCATCCTG 4.1 9.9e-04 -6.923 3.006 7 7 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -863 -850 ATGCATGACCTTCT 4.1 9.9e-04 -6.923 3.006 8 8 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -100 -87 TAACTTGCCTTAAT 4.9 5.8e-04 -7.452 3.237 1 1 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -20 -7 ATTCATGCCGGGCA 4.6 7.1e-04 -7.250 3.148 2 2 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -388 -375 NNNNNNNCCTCTTT 4.4 8.1e-04 -7.117 3.091 3 3 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 R -806 -793 GGTCATGCTATCCA 4.3 8.7e-04 -7.052 3.063 4 4 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site oligos_6-8nt_m2oligos_6-8nt_m2 D 74 87 TAACATGGCACCAA 4.1 9.9e-04 -6.923 3.006 5 5 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -164 -151 TAACTTGCCATTTG 5.7 3.3e-04 -8.008 3.478 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -578 -565 NNNNNNGCCGTTCG 5.6 3.5e-04 -7.944 3.450 2 2 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m2oligos_6-8nt_m2 D -876 -863 AAACATGACATTAG 5.2 4.7e-04 -7.652 3.323 3 3 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 R -93 -80 TCTCATGCTTTCCT 7.3 9.2e-05 -9.288 4.034 1 1 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 R -756 -743 ACACTTGCCATTTT 6.0 2.7e-04 -8.233 3.575 2 2 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 R 133 146 CTCCATGGCCTTCA 5.0 5.5e-04 -7.514 3.263 3 3 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 D -490 -477 AAACATGCCAAGGC 4.6 7.1e-04 -7.250 3.148 4 4 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 R -710 -697 TTTCTTGGCTCTAT 4.5 7.6e-04 -7.176 3.117 5 5 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 site oligos_6-8nt_m2oligos_6-8nt_m2 D 64 77 AACTATGGCTCCAT 4.1 9.9e-04 -6.923 3.006 6 6 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m2oligos_6-8nt_m2 R -51 -38 TTACATGCATTTAT 7.4 8.5e-05 -9.372 4.070 1 1 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -47 -34 TTTCATGGCATGCC 7.1 1.1e-04 -9.118 3.960 1 1 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R 137 150 CTCCATGCCCTTCA 7.1 1.1e-04 -9.118 3.960 2 2 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -830 -817 GATCATGCATGTAC 6.4 1.9e-04 -8.548 3.712 3 3 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 R -46 -33 TGGCATGCCATGAA 5.5 3.8e-04 -7.864 3.415 4 4 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -42 -29 TGGCATGCCAATTG 4.6 7.1e-04 -7.250 3.148 5 5 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m2oligos_6-8nt_m2 D -546 -533 ATACATGCTAATAT 4.5 7.6e-04 -7.176 3.117 6 6 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 D -222 -209 ACTTATGCATTTTC 6.6 1.7e-04 -8.705 3.781 1 1 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1294 -1281 ACTTATGCCACATT 4.3 8.7e-04 -7.052 3.063 2 2 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m2oligos_6-8nt_m2 R -989 -976 TTTCATTCCTTTCA 4.2 9.3e-04 -6.980 3.031 3 3 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 R -183 -170 TAGCATGCTTTTTA 7.3 9.2e-05 -9.288 4.034 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 D -217 -204 ATGCATGCATGTAC 5.1 5.1e-04 -7.590 3.296 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 R -221 -208 ATGCATGCATTATT 4.7 6.7e-04 -7.310 3.175 3 3 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m2oligos_6-8nt_m2 R -665 -652 NNNNACGCCTCCAT 4.3 8.7e-04 -7.052 3.063 4 4 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 R 73 86 TAGCATGCTTTTTA 7.3 9.2e-05 -9.288 4.034 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 D 39 52 ATGCATGCATGTAC 5.1 5.1e-04 -7.590 3.296 2 2 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m2oligos_6-8nt_m2 R 35 48 ATGCATGCATTATT 4.7 6.7e-04 -7.310 3.175 3 3 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R 57 70 CTTTACGCCATTTC 5.4 4.1e-04 -7.800 3.387 1 1 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 14 4 1 -30.400 13.200 43.600 a:0.340 c:0.190 g:0.155 t:0.315 ; Number of sequences scanned 15 ; Sum of sequence lengths 23349 ; N residues 3647 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 70 46308 ; TOTAL 70 46308 ; Host name rsat ; Job started 2026-06-17.095054 ; Job done 2026-06-17.095059 ; Seconds 4.38 ; user 4.38 ; system 0.02 ; cuser 0.11 ; csystem 0.02