; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.081151_17zmap -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.081151_WwOzYt_7nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Slow counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 7
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.081151_17zmap
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.081151_WwOzYt_7nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 1.28e-07
; Sequence type other
; Nb of sequences 13219
; Sum of sequence lengths 297323989
; nb possible positions 297244675
; total oligo occurrences 297244675
; total overlapping occurrences 2844233
; total non overlapping occ 294400442
; alphabet size 5
; nb possible oligomers 78125
; oligomers tested for significance 16446
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
ctactcg ctactcg 0.0000089138595 22062 2649.60 0 0e+00 350.00 1 0 132336
ggaggtg ggaggtg 0.0000926379584 45048 27536.14 0 0e+00 350.00 2 281 270203
tggcgcg tggcgcg 0.0000067689575 9716 2012.04 0 0e+00 350.00 3 0 58283
tgtcttt tgtcttt 0.0001376318146 50334 40910.32 0 0e+00 350.00 4 70 301985
aaggcag aaggcag 0.0001186413734 46665 35265.52 0 0e+00 350.00 5 0 279990
tattcat tattcat 0.0000804899871 33894 23925.22 0 0e+00 350.00 6 33 203364
atgtctt atgtctt 0.0000784276738 30021 23312.21 0 0e+00 350.00 7 0 180114
gtcaccc gtcaccc 0.0000432249686 33942 12848.39 0 0e+00 350.00 8 0 203594
cccgcgg cccgcgg 0.0000054975776 3454 1634.13 0 0e+00 350.00 9 0 20723
acggagt acggagt 0.0000168978681 17220 5022.80 0 0e+00 350.00 10 0 103312
caagtga caagtga 0.0000684419529 57618 20344.01 0 0e+00 350.00 11 0 345622
ataaatg ataaatg 0.0001288337511 48808 38295.15 0 0e+00 350.00 12 0 292832
attattt attattt 0.0001691715031 79127 50285.33 0 0e+00 350.00 13 0 474757
gaagaaa gaagaaa 0.0001340942465 65296 39858.80 0 0e+00 350.00 14 0 391721
ccctgtc ccctgtc 0.0000749403892 46781 22275.63 0 0e+00 350.00 15 36 280605
gggtggg gggtggg 0.0000698433213 36648 20760.56 0 0e+00 350.00 16 1369 219879
tatgttg tatgttg 0.0000600911475 30768 17861.77 0 0e+00 350.00 17 0 184595
gctcacg gctcacg 0.0000160508499 31497 4771.03 0 0e+00 350.00 18 5 188978
ggatcgc ggatcgc 0.0000081724485 6663 2429.22 0 0e+00 350.00 19 0 39966
tgagtag tgagtag 0.0000591810604 37378 17591.26 0 0e+00 350.00 20 0 224202
ctgggag ctgggag 0.0001316093197 61281 39120.17 0 0e+00 350.00 21 0 367596
gcgatct gcgatct 0.0000107409721 15356 3192.70 0 0e+00 350.00 22 0 92117
tgggcgt tgggcgt 0.0000205162161 13343 6098.34 0 0e+00 350.00 23 3 80052
cggccgc cggccgc 0.0000051327591 5179 1525.69 0 0e+00 350.00 24 16 31074
tcctagc tcctagc 0.0000398022195 21394 11831.00 0 0e+00 350.00 25 0 128353
gactaca gactaca 0.0000366395475 43198 10890.91 0 0e+00 350.00 26 0 259119
gtttgtt gtttgtt 0.0000796868622 42014 23686.50 0 0e+00 350.00 27 6737 252082
tagccgg tagccgg 0.0000152813041 19199 4542.29 0 0e+00 350.00 28 0 115187
acacctg acacctg 0.0001065911486 53334 31683.65 0 0e+00 350.00 29 0 319983
aaataca aaataca 0.0001573743362 116958 46778.68 0 0e+00 350.00 30 113 701684
tgatctt tgatctt 0.0000717929068 32143 21340.06 0 0e+00 350.00 31 12 192846
gatggag gatggag 0.0000731056732 43733 21730.27 0 0e+00 350.00 32 38 262372
aggatgg aggatgg 0.0000761825349 38850 22644.85 0 0e+00 350.00 33 0 233078
gcttcct gcttcct 0.0000696609865 28714 20706.36 0 0e+00 350.00 34 0 172281
gcccacc gcccacc 0.0000686472078 30804 20405.02 0 0e+00 350.00 35 0 184814
ttggcca ttggcca 0.0001275375600 61548 37909.86 0 0e+00 350.00 36 0 369257
tggggtt tggggtt 0.0000767238459 42401 22805.75 0 0e+00 350.00 37 18 254383
ccaacat ccaacat 0.0000646305666 57730 19211.09 0 0e+00 350.00 38 0 346266
taacacg taacacg 0.0000137235149 8034 4079.24 0 0e+00 350.00 39 0 48187
acaacaa acaacaa 0.0000680098901 31030 20215.58 0 0e+00 350.00 40 7839 186158
tgcccag tgcccag 0.0001178706160 86563 35036.41 0 0e+00 350.00 41 0 519306
gcccggg gcccggg 0.0000182925149 10774 5437.35 0 0e+00 350.00 42 13 64644
gtgagac gtgagac 0.0000635181916 39925 18880.44 0 0e+00 350.00 43 0 239276
aacatag aacatag 0.0000630674598 29834 18746.47 0 0e+00 350.00 44 0 178969
aattaaa aattaaa 0.0001817299194 72455 54018.25 0 0e+00 350.00 45 995 434700
tataata tataata 0.0000848179034 39567 25211.67 0 0e+00 350.00 46 269 237380
cacccac cacccac 0.0000765205639 32499 22745.33 0 0e+00 350.00 47 484 194950
atgttga atgttga 0.0000619921085 27125 18426.82 0 0e+00 350.00 48 14 162742
tgagact tgagact 0.0000911918865 42158 27106.30 0 0e+00 350.00 49 16 252741
aattagc aattagc 0.0000621674007 81702 18478.93 0 0e+00 350.00 50 0 490160
; Host name rsat
; Job started 2026-06-17.082226
; Job done 2026-06-17.083321
; Seconds 653.96
; user 653.96
; system 0.24
; cuser 0
; csystem 0