; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.081151_17zmap -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.081151_WwOzYt_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Slow counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.081151_17zmap
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.081151_WwOzYt_8nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 2.56e-08
; Sequence type other
; Nb of sequences 13219
; Sum of sequence lengths 297323989
; nb possible positions 297231456
; total oligo occurrences 297231456
; total overlapping occurrences 2309463
; total non overlapping occ 294921993
; alphabet size 5
; nb possible oligomers 390625
; oligomers tested for significance 65609
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
cggagctt cggagctt 0.0000058014292 6522 1724.37 0 0e+00 350.00 1 0 45625
gcctataa gcctataa 0.0000194057354 10659 5767.99 0 0e+00 350.00 2 0 74604
gccccgcc gccccgcc 0.0000048999437 4354 1456.42 0 0e+00 350.00 3 111 30471
aatcttgg aatcttgg 0.0000207203604 9939 6158.74 0 0e+00 350.00 4 0 69553
gagagaga gagagaga 0.0000470532482 21727 13985.71 0 0e+00 350.00 5 15244 152063
aatataca aatataca 0.0000291093481 12824 8652.21 0 0e+00 350.00 6 8 89762
gcctggct gcctggct 0.0000314493759 27914 9347.74 0 0e+00 350.00 7 0 195368
gtgcgatc gtgcgatc 0.0000020537504 5862 610.44 0 0e+00 350.00 8 0 41002
gcctgacc gcctgacc 0.0000156352538 12604 4647.29 0 0e+00 350.00 9 0 88198
gtgccacc gtgccacc 0.0000184594170 15455 5486.72 0 0e+00 350.00 10 0 108175
tccgcccg tccgcccg 0.0000014354087 6221 426.65 0 0e+00 350.00 11 0 43538
tgcctata tgcctata 0.0000192122406 9218 5710.48 0 0e+00 350.00 12 0 64521
tcaggagt tcaggagt 0.0000298240330 43466 8864.64 0 0e+00 350.00 13 2 304164
cgcttgaa cgcttgaa 0.0000044523663 17507 1323.38 0 0e+00 350.00 14 0 122068
gaaaggaa gaaaggaa 0.0000338436146 16860 10059.39 0 0e+00 350.00 15 320 118015
ccgcgcgg ccgcgcgg 0.0000004223561 776 125.54 0 0e+00 350.00 16 0 5432
cttgaggc cttgaggc 0.0000203300437 10522 6042.73 0 0e+00 350.00 17 0 73635
cacacacc cacacacc 0.0000273578688 12571 8131.62 0 0e+00 350.00 18 47 87997
gttggtca gttggtca 0.0000100344868 11233 2982.57 0 0e+00 350.00 19 0 78622
tcctgggc tcctgggc 0.0000282079212 23926 8384.28 0 0e+00 350.00 20 0 167381
tggctaat tggctaat 0.0000201724361 28394 5995.88 0 0e+00 350.00 21 2 198743
tcctgagt tcctgagt 0.0000297493277 28929 8842.44 0 0e+00 350.00 22 4 202361
gtctcaaa gtctcaaa 0.0000290218011 63563 8626.19 0 0e+00 350.00 23 0 444379
cacctccc cacctccc 0.0000235557068 20797 7001.50 0 0e+00 350.00 24 24 145542
ttgttttt ttgttttt 0.0000852902674 50764 25350.95 0 0e+00 350.00 25 3588 355331
ggtgatct ggtgatct 0.0000149131880 8895 4432.67 0 0e+00 350.00 26 0 62258
tgagctga tgagctga 0.0000314918512 22955 9360.37 0 0e+00 350.00 27 26 160442
tttccttc tttccttc 0.0000335256161 18305 9964.87 0 0e+00 350.00 28 0 128129
ggcagagg ggcagagg 0.0000337012241 32790 10017.06 0 0e+00 350.00 29 48 229426
ttttgttt ttttgttt 0.0000852902674 58827 25350.95 0 0e+00 350.00 30 9328 411787
ggtggcag ggtggcag 0.0000252913435 16221 7517.38 0 0e+00 350.00 31 3 113536
taataaaa taataaaa 0.0000583132351 25146 17332.53 0 0e+00 350.00 32 0 175966
ttaatata ttaatata 0.0000266013071 12392 7906.75 0 0e+00 350.00 33 0 86744
gaagtaga gaagtaga 0.0000108453613 5893 3223.58 0 0e+00 350.00 34 6 41251
cagctact cagctact 0.0000145336125 72685 4319.85 0 0e+00 350.00 35 0 508683
ggcgtgag ggcgtgag 0.0000060589964 26720 1800.92 0 0e+00 350.00 36 0 187023
ccatgcct ccatgcct 0.0000224753688 18306 6680.39 0 0e+00 350.00 37 0 128139
gccaaggt gccaaggt 0.0000147526714 12089 4384.96 0 0e+00 350.00 38 0 84592
tacaggcg tacaggcg 0.0000060014059 41084 1783.81 0 0e+00 350.00 39 0 287549
ccaccccc ccaccccc 0.0000178062319 10898 5292.57 0 0e+00 350.00 40 199 76254
gatcatga gatcatga 0.0000110506086 8200 3284.59 0 0e+00 350.00 41 3 57390
aggcgtgg aggcgtgg 0.0000067448350 10466 2004.78 0 0e+00 350.00 42 0 73256
ggttgagg ggttgagg 0.0000149884461 8554 4455.04 0 0e+00 350.00 43 6 59855
cgcctccc cgcctccc 0.0000061088006 16312 1815.73 0 0e+00 350.00 44 6 114149
gaggtcag gaggtcag 0.0000200580265 47807 5961.88 0 0e+00 350.00 45 14 334544
gaaaccct gaaaccct 0.0000231929870 19945 6893.69 0 0e+00 350.00 46 0 139597
ctggcctc ctggcctc 0.0000385420839 19204 11455.92 0 0e+00 350.00 47 5 134406
ggaagcag ggaagcag 0.0000196661208 10489 5845.39 0 0e+00 350.00 48 4 73414
aaatagaa aaatagaa 0.0000422577961 19598 12560.35 0 0e+00 350.00 49 51 137182
tattatta tattatta 0.0000216089802 19673 6422.87 0 0e+00 350.00 50 6992 137710
; Host name rsat
; Job started 2026-06-17.083321
; Job done 2026-06-17.084543
; Seconds 742.28
; user 742.28
; system 0.27
; cuser 0
; csystem 0