; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.085039_xLaMFX -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.085039_KzEHtt_7nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Slow counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 7
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.085039_xLaMFX
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.085039_KzEHtt_7nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 1.28e-07
; Sequence type other
; Nb of sequences 13219
; Sum of sequence lengths 297323989
; nb possible positions 297244675
; total oligo occurrences 297244675
; total overlapping occurrences 2844233
; total non overlapping occ 294400442
; alphabet size 5
; nb possible oligomers 78125
; oligomers tested for significance 16446
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
ggcatga ggcatga 0.0000647130406 52314 19235.61 0 0e+00 350.00 1 0 313753
taacatt taacatt 0.0000777803487 32294 23119.79 0 0e+00 350.00 2 24 193764
ctgtctc ctgtctc 0.0001010315669 87381 30031.10 0 0e+00 350.00 3 218 523530
gttttgt gttttgt 0.0001165467561 43148 34642.90 0 0e+00 350.00 4 4327 258875
gaagttg gaagttg 0.0000446422133 20418 13269.66 0 0e+00 350.00 5 16 122485
tcaagca tcaagca 0.0000634793406 43109 18868.90 0 0e+00 350.00 6 0 258601
acaaggt acaaggt 0.0000569590887 23908 16930.79 0 0e+00 350.00 7 0 143442
cggagtc cggagtc 0.0000143035685 13561 4251.66 0 0e+00 350.00 8 4 81362
cttctct cttctct 0.0001211923951 44917 36023.79 0 0e+00 350.00 9 269 269482
gtcagga gtcagga 0.0000699995620 65929 20807.00 0 0e+00 350.00 10 0 395453
tgttgcc tgttgcc 0.0000636460478 55358 18918.45 0 0e+00 350.00 11 0 332051
cccggcc cccggcc 0.0000216099423 28114 6423.44 0 0e+00 350.00 12 160 168672
gagatga gagatga 0.0000748274787 29980 22242.07 0 0e+00 350.00 13 78 179874
gatcgtg gatcgtg 0.0000082515159 10409 2452.72 0 0e+00 350.00 14 0 62348
aatatta aatatta 0.0001068775271 46519 31768.78 0 0e+00 350.00 15 96 279111
cttcttc cttcttc 0.0000673966384 31800 20033.29 0 0e+00 350.00 16 2537 190789
ttagccg ttagccg 0.0000162641748 18616 4834.44 0 0e+00 350.00 17 0 111684
gattctc gattctc 0.0000737845242 48051 21932.06 0 0e+00 350.00 18 0 288113
tgttgtt tgttgtt 0.0000745014487 36670 22145.16 0 0e+00 350.00 19 7982 220020
gcgggcg gcgggcg 0.0000047035941 14107 1398.12 0 0e+00 350.00 20 155 84637
atcctgg atcctgg 0.0000965938458 36345 28712.01 0 0e+00 350.00 21 0 218024
ccagcac ccagcac 0.0000860875645 84274 25589.07 0 0e+00 350.00 22 17 505535
aaaaatt aaaaatt 0.0004648043731 171991 138160.62 0 0e+00 350.00 23 0 1031831
gaaggga gaaggga 0.0000698399891 30579 20759.56 0 0e+00 350.00 24 339 183474
ttatata ttatata 0.0001039024359 51162 30884.45 0 0e+00 350.00 25 0 306967
caccttg caccttg 0.0000687484582 27103 20435.11 0 0e+00 350.00 26 0 162588
atgactt atgactt 0.0000592627162 23553 17615.53 0 0e+00 350.00 27 0 141312
aaccccg aaccccg 0.0000149733737 23884 4450.76 0 0e+00 350.00 28 0 143257
ctactaa ctactaa 0.0000387001481 69110 11503.41 0 0e+00 350.00 29 0 414379
gaaataa gaaataa 0.0001390354303 55676 41327.54 0 0e+00 350.00 30 0 334048
aaaatac aaaatac 0.0001685249756 110688 50093.15 0 0e+00 350.00 31 0 664081
gccgcgg gccgcgg 0.0000053979791 3931 1604.52 0 0e+00 350.00 32 6 23586
agccggg agccggg 0.0000226332316 25833 6727.61 0 0e+00 350.00 33 0 154987
tttactt tttactt 0.0001144285241 43450 34013.27 0 0e+00 350.00 34 145 260683
tggagtg tggagtg 0.0001214715905 83716 36106.78 0 0e+00 350.00 35 268 502050
acttgag acttgag 0.0000677443911 43284 20136.66 0 0e+00 350.00 36 0 259639
atggagt atggagt 0.0000880899369 36967 26184.26 0 0e+00 350.00 37 0 221784
aggctga aggctga 0.0001209674018 130271 35956.92 0 0e+00 350.00 38 131 781500
aaatgat aaatgat 0.0001220828962 43863 36288.49 0 0e+00 350.00 39 0 263174
tcattta tcattta 0.0001132476515 41950 33662.26 0 0e+00 350.00 40 0 251689
cacaccc cacaccc 0.0000838615800 32964 24927.41 0 0e+00 350.00 41 66 197776
ttaagaa ttaagaa 0.0001079032136 40977 32073.66 0 0e+00 350.00 42 0 245834
ggaagag ggaagag 0.0000922110521 35142 27409.24 0 0e+00 350.00 43 134 210841
ctcatgc ctcatgc 0.0000669946878 39539 19913.81 0 0e+00 350.00 44 6 237163
gggatta gggatta 0.0000571804211 115674 16996.58 0 0e+00 350.00 45 0 693938
acccagg acccagg 0.0000890652487 68807 26474.17 0 0e+00 350.00 46 0 412721
ggtcggg ggtcggg 0.0000086811743 7142 2580.43 0 0e+00 350.00 47 8 42848
gcatgtg gcatgtg 0.0000681242920 28204 20249.58 0 0e+00 350.00 48 52 169217
ccaggat ccaggat 0.0000966284565 35867 28722.29 0 0e+00 350.00 49 0 215164
aacaaat aacaaat 0.0001272594476 49134 37827.19 0 0e+00 350.00 50 0 294795
; Host name rsat
; Job started 2026-06-17.090104
; Job done 2026-06-17.091144
; Seconds 639.97
; user 639.97
; system 0.35
; cuser 0
; csystem 0