; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.085039_xLaMFX -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.085039_KzEHtt_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Slow counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.085039_xLaMFX
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.085039_KzEHtt_8nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 2.56e-08
; Sequence type other
; Nb of sequences 13219
; Sum of sequence lengths 297323989
; nb possible positions 297231456
; total oligo occurrences 297231456
; total overlapping occurrences 2309463
; total non overlapping occ 294921993
; alphabet size 5
; nb possible oligomers 390625
; oligomers tested for significance 65609
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
gaccatcc gaccatcc 0.0000095038991 16035 2824.86 0 0e+00 350.00 1 0 112171
tcacccag tcacccag 0.0000272801343 29457 8108.51 0 0e+00 350.00 2 0 206156
gcacacgc gcacacgc 0.0000041641077 3881 1237.70 0 0e+00 350.00 3 14 27167
cctccccg cctccccg 0.0000057866353 4092 1719.97 0 0e+00 350.00 4 0 28644
cattcttc cattcttc 0.0000191318172 8974 5686.58 0 0e+00 350.00 5 4 62818
tgcgcctg tgcgcctg 0.0000086209394 5583 2562.41 0 0e+00 350.00 6 1 39081
tcttcttt tcttcttt 0.0000410030846 21883 12187.41 0 0e+00 350.00 7 51 153181
cggggccg cggggccg 0.0000012621974 1873 375.16 0 0e+00 350.00 8 39 13111
atttttgt atttttgt 0.0000744419177 57716 22126.48 0 0e+00 350.00 9 0 404002
gcacagtg gcacagtg 0.0000262957068 15528 7815.91 0 0e+00 350.00 10 2 108695
cccgcgcc cccgcgcc 0.0000014664783 1857 435.88 0 0e+00 350.00 11 21 12999
gcctaggc gcctaggc 0.0000114673900 9001 3408.47 0 0e+00 350.00 12 1 62957
acgttggc acgttggc 0.0000024880606 2335 739.53 0 0e+00 350.00 13 0 16345
ctgaggcg ctgaggcg 0.0000086278150 8807 2564.46 0 0e+00 350.00 14 0 61631
accctgtc accctgtc 0.0000163582311 30440 4862.18 0 0e+00 350.00 15 0 212961
catctcaa catctcaa 0.0000229902197 23106 6833.42 0 0e+00 350.00 16 0 161496
agtttgag agtttgag 0.0000285974744 27636 8500.07 0 0e+00 350.00 17 8 193347
ggaggttg ggaggttg 0.0000159354832 36675 4736.53 0 0e+00 350.00 18 16 256532
tcccaggt tcccaggt 0.0000245790897 24996 7305.68 0 0e+00 350.00 19 1 174937
aggcagga aggcagga 0.0000337305878 66891 10025.79 0 0e+00 350.00 20 9 468151
attacatt attacatt 0.0000226952356 10218 6745.74 0 0e+00 350.00 21 35 71520
aggttgca aggttgca 0.0000145276992 47099 4318.09 0 0e+00 350.00 22 11 329478
cgcaacct cgcaacct 0.0000033488451 3214 995.38 0 0e+00 350.00 23 0 22490
gggaggat gggaggat 0.0000206504968 20357 6137.98 0 0e+00 350.00 24 0 142414
gggactac gggactac 0.0000066981436 29828 1990.90 0 0e+00 350.00 25 0 208722
agtgatct agtgatct 0.0000190171659 10455 5652.50 0 0e+00 350.00 26 0 73182
caccactg caccactg 0.0000291130924 24504 8653.33 0 0e+00 350.00 27 0 171321
gcgagact gcgagact 0.0000035680792 14135 1060.55 0 0e+00 350.00 28 0 98776
gatggagt gatggagt 0.0000163313981 22947 4854.21 0 0e+00 350.00 29 0 160608
cgcaatct cgcaatct 0.0000042503951 5049 1263.35 0 0e+00 350.00 30 0 35317
tgcctccc tgcctccc 0.0000265266065 22719 7884.54 0 0e+00 350.00 31 0 158998
ggttgggg ggttgggg 0.0000120152564 7134 3571.31 0 0e+00 350.00 32 28 49933
gccaggag gccaggag 0.0000348264738 16282 10351.52 0 0e+00 350.00 33 1 113947
aaactccg aaactccg 0.0000082712838 5333 2458.49 0 0e+00 350.00 34 0 37304
gttgtagt gttgtagt 0.0000071688476 4268 2130.81 0 0e+00 350.00 35 0 29853
gggaccac gggaccac 0.0000125426220 6532 3728.06 0 0e+00 350.00 36 0 45710
gccgccgc gccgccgc 0.0000013366946 2710 397.31 0 0e+00 350.00 37 872 18968
cctgtctc cctgtctc 0.0000272129986 38703 8088.56 0 0e+00 350.00 38 3 270676
gctgggac gctgggac 0.0000145419426 37878 4322.32 0 0e+00 350.00 39 0 265091
gcgccacc gcgccacc 0.0000050884594 6582 1512.45 0 0e+00 350.00 40 0 46059
tgcatgcc tgcatgcc 0.0000157628645 10715 4685.22 0 0e+00 350.00 41 0 74997
ggaggctg ggaggctg 0.0000324323548 102629 9639.92 0 0e+00 350.00 42 11 718290
aggatggt aggatggt 0.0000165715086 18583 4925.57 0 0e+00 350.00 43 0 130066
cacacacg cacacacg 0.0000064299401 4107 1911.18 0 0e+00 350.00 44 0 28747
cccggcct cccggcct 0.0000072035425 9114 2141.12 0 0e+00 350.00 45 0 63794
acctcagc acctcagc 0.0000220815771 24531 6563.34 0 0e+00 350.00 46 0 171664
gagctggg gagctggg 0.0000259760106 11849 7720.89 0 0e+00 350.00 47 12 82931
gaagaagg gaagaagg 0.0000182325551 9031 5419.29 0 0e+00 350.00 48 14 63203
catgcacc catgcacc 0.0000139986359 9873 4160.83 0 0e+00 350.00 49 0 69108
cactgcag cactgcag 0.0000297633080 22926 8846.59 0 0e+00 350.00 50 0 160432
; Host name rsat
; Job started 2026-06-17.091144
; Job done 2026-06-17.092419
; Seconds 754.4
; user 754.4
; system 0.28
; cuser 0
; csystem 0