; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.100531_NsI0jE -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.100531_kGiIXh_7nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 7 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.100531_NsI0jE ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.100531_kGiIXh_7nt.tab ; Discard overlapping matches ; Counted on a single strand ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 1.28e-07 ; Sequence type other ; Nb of sequences 13219 ; Sum of sequence lengths 297323989 ; nb possible positions 297244675 ; total oligo occurrences 297244675 ; total overlapping occurrences 2844233 ; total non overlapping occ 294400442 ; alphabet size 5 ; nb possible oligomers 78125 ; oligomers tested for significance 16446 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc ggagacg ggagacg 0.0000142320558 7289 4230.40 0 0e+00 350.00 1 9 43725 ccccatc ccccatc 0.0000544478250 44991 16184.33 0 0e+00 350.00 2 39 269853 gtcttga gtcttga 0.0000468498874 37117 13925.88 0 0e+00 350.00 3 0 222620 tccagcc tccagcc 0.0001045050050 96030 31063.56 0 0e+00 350.00 4 0 575623 cgcgggg cgcgggg 0.0000047787341 3770 1420.45 0 0e+00 350.00 5 0 22620 gacagag gacagag 0.0001019591289 84097 30306.81 0 0e+00 350.00 6 229 504362 gattata gattata 0.0000619633024 29471 18418.26 0 0e+00 350.00 7 0 176811 ttgttta ttgttta 0.0001067155930 39197 31720.64 0 0e+00 350.00 8 0 235174 gcttgca gcttgca 0.0000496835707 21634 14768.18 0 0e+00 350.00 9 0 129771 atttcta atttcta 0.0001070732297 43094 31826.95 0 0e+00 350.00 10 56 258543 tctcggc tctcggc 0.0000192072094 29842 5709.24 0 0e+00 350.00 11 0 178984 aagacca aagacca 0.0000780461310 44295 23198.80 0 0e+00 350.00 12 16 265736 ggttcac ggttcac 0.0000478539708 20784 14224.34 0 0e+00 350.00 13 0 124686 actagaa actagaa 0.0000513574657 22984 15265.73 0 0e+00 350.00 14 18 137878 ggtgtgg ggtgtgg 0.0000892520935 42451 26529.71 0 0e+00 350.00 15 221 254688 gggctca gggctca 0.0000956834105 36831 28441.38 0 0e+00 350.00 16 0 220967 gctagga gctagga 0.0000399018392 21024 11860.61 0 0e+00 350.00 17 0 126118 cccgagt cccgagt 0.0000147652258 23603 4388.88 0 0e+00 350.00 18 0 141545 ctgcccg ctgcccg 0.0000228315754 12865 6786.56 0 0e+00 350.00 19 0 77188 aagaaac aagaaac 0.0001039133654 41544 30887.69 0 0e+00 350.00 20 0 249218 catgccc catgccc 0.0000630017178 34922 18726.93 0 0e+00 350.00 21 16 209511 aaacaac aaacaac 0.0000803654847 34045 23888.21 0 0e+00 350.00 22 0 204199 tcttctt tcttctt 0.0001017414003 48345 30242.09 0 0e+00 350.00 23 3398 290063 catatat catatat 0.0000930057493 40519 27645.46 0 0e+00 350.00 24 0 243101 tgcaacc tgcaacc 0.0000434557538 54840 12916.99 0 0e+00 350.00 25 0 328834 acgccat acgccat 0.0000183896376 10634 5466.22 0 0e+00 350.00 26 0 63760 aatcgct aatcgct 0.0000162522959 20487 4830.91 0 0e+00 350.00 27 0 122885 gcaggcg gcaggcg 0.0000216774121 14512 6443.50 0 0e+00 350.00 28 6 87065 tcctggc tcctggc 0.0001107848530 48241 32930.21 0 0e+00 350.00 29 0 289374 gaagatg gaagatg 0.0000570034465 24520 16943.97 0 0e+00 350.00 30 45 147099 ggggttt ggggttt 0.0000899021893 57191 26722.95 0 0e+00 350.00 31 0 343128 ggaagag ggaagag 0.0000922110521 35142 27409.24 0 0e+00 350.00 32 134 210841 taaacaa taaacaa 0.0001075509838 39560 31968.96 0 0e+00 350.00 33 0 237360 gtcttcc gtcttcc 0.0000480884455 19419 14294.03 0 0e+00 350.00 34 0 116504 ctcactg ctcactg 0.0001262601006 95722 37530.14 0 0e+00 350.00 35 0 574178 ctccgcc ctccgcc 0.0000261942920 27197 7786.11 0 0e+00 350.00 36 21 163155 actttgg actttgg 0.0000908783185 93539 27013.10 0 0e+00 350.00 37 0 561186 cctctgc cctctgc 0.0001111683402 52903 33044.20 0 0e+00 350.00 38 64 317341 ctggcta ctggcta 0.0000805143549 52132 23932.46 0 0e+00 350.00 39 0 312742 aagtaaa aagtaaa 0.0001152732994 43654 34264.37 0 0e+00 350.00 40 136 261899 agtggca agtggca 0.0001071520332 43789 31850.37 0 0e+00 350.00 41 26 262676 cggtggc cggtggc 0.0000180076562 28728 5352.68 0 0e+00 350.00 42 12 172368 cgggcgc cgggcgc 0.0000046920279 14388 1394.68 0 0e+00 350.00 43 13 86324 aggcggg aggcggg 0.0000258858733 30344 7694.44 0 0e+00 350.00 44 0 182022 aaatgtt aaatgtt 0.0001551817304 58822 46126.94 0 0e+00 350.00 45 0 352922 tttttga tttttga 0.0003089800040 104547 91842.66 0 0e+00 350.00 46 0 627277 actgcac actgcac 0.0000687471956 77624 20434.74 0 0e+00 350.00 47 85 465333 gaggtcg gaggtcg 0.0000099861669 8489 2968.33 0 0e+00 350.00 48 2 50918 cagagtc cagagtc 0.0000867499224 34241 25785.95 0 0e+00 350.00 49 16 205414 tgggagg tgggagg 0.0001177552346 163996 35002.12 0 0e+00 350.00 50 0 983758 ; Host name rsat ; Job started 2026-06-17.101558 ; Job done 2026-06-17.102651 ; Seconds 652.77 ; user 652.77 ; system 0.33 ; cuser 0 ; csystem 0