; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.100531_NsI0jE -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype other -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.100531_kGiIXh_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Slow counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.100531_NsI0jE
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.100531_kGiIXh_8nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model Markov
; Background estimation method Markov model estimated from input sequences
; Markov chain order 2
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 2.56e-08
; Sequence type other
; Nb of sequences 13219
; Sum of sequence lengths 297323989
; nb possible positions 297231456
; total oligo occurrences 297231456
; total overlapping occurrences 2309463
; total non overlapping occ 294921993
; alphabet size 5
; nb possible oligomers 390625
; oligomers tested for significance 65609
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
atgccacc atgccacc 0.0000192704563 9609 5727.79 0 0e+00 350.00 1 0 67252
taataaat taataaat 0.0000345836085 18348 10279.34 0 0e+00 350.00 2 27 128436
ggatcact ggatcact 0.0000144037173 21372 4281.24 0 0e+00 350.00 3 0 149549
aagctccg aagctccg 0.0000057911026 6432 1721.30 0 0e+00 350.00 4 0 45024
cactgcag cactgcag 0.0000297633080 22926 8846.59 0 0e+00 350.00 5 0 160432
ctcttcct ctcttcct 0.0000305834342 14341 9090.36 0 0e+00 350.00 6 93 100378
tcacgcca tcacgcca 0.0000066096594 13435 1964.60 0 0e+00 350.00 7 0 93995
taaattaa taaattaa 0.0000368323311 15446 10947.73 0 0e+00 350.00 8 231 108122
gtggctca gtggctca 0.0000284208037 72551 8447.56 0 0e+00 350.00 9 0 507835
acccgcct acccgcct 0.0000056109345 9282 1667.75 0 0e+00 350.00 10 0 64963
ggaggcca ggaggcca 0.0000348569241 29968 10360.57 0 0e+00 350.00 11 0 209724
tacatgta tacatgta 0.0000129022781 7641 3834.96 0 0e+00 350.00 12 15 53483
tctacaaa tctacaaa 0.0000254528017 20474 7565.37 0 0e+00 350.00 13 0 143253
aggcagga aggcagga 0.0000337305878 66891 10025.79 0 0e+00 350.00 14 9 468151
gcaggtgg gcaggtgg 0.0000226080609 15487 6719.83 0 0e+00 350.00 15 6 108399
tccttccc tccttccc 0.0000188105398 12094 5591.08 0 0e+00 350.00 16 0 84652
gtgcccag gtgcccag 0.0000259240514 12215 7705.44 0 0e+00 350.00 17 1 85491
cctgcctt cctgcctt 0.0000317457658 19685 9435.84 0 0e+00 350.00 18 0 137735
aaggtggg aaggtggg 0.0000241336199 14016 7173.27 0 0e+00 350.00 19 0 98093
tgcgcccg tgcgcccg 0.0000014443930 2746 429.32 0 0e+00 350.00 20 0 19218
aaagaaaa aaagaaaa 0.0001122351593 72982 33359.82 0 0e+00 350.00 21 7338 510415
ccgcgcct ccgcgcct 0.0000019159843 3344 569.49 0 0e+00 350.00 22 0 23405
cccatccc cccatccc 0.0000147379310 8010 4380.58 0 0e+00 350.00 23 71 56070
ccaaggtg ccaaggtg 0.0000186896365 12543 5555.15 0 0e+00 350.00 24 0 87781
tatgtatg tatgtatg 0.0000169763431 8319 5045.90 0 0e+00 350.00 25 750 58226
ctcccacc ctcccacc 0.0000237930557 22932 7072.04 0 0e+00 350.00 26 21 160446
aagaacta aagaacta 0.0000139914549 6877 4158.70 0 0e+00 350.00 27 3 48139
gctatgat gctatgat 0.0000104226298 6629 3097.93 0 0e+00 350.00 28 0 46396
gagaaaga gagaaaga 0.0000407749287 18144 12119.59 0 0e+00 350.00 29 151 126984
caaggcag caaggcag 0.0000234171665 16197 6960.32 0 0e+00 350.00 30 0 113379
tggggaag tggggaag 0.0000221489459 10843 6583.36 0 0e+00 350.00 31 0 75897
ccccgccc ccccgccc 0.0000049920650 7062 1483.80 0 0e+00 350.00 32 296 49434
gagaccct gagaccct 0.0000189218690 13254 5624.17 0 0e+00 350.00 33 0 92735
aacaaaca aacaaaca 0.0000303375501 24517 9017.27 0 0e+00 350.00 34 6199 171564
acgcccgg acgcccgg 0.0000011798009 8027 350.67 0 0e+00 350.00 35 0 56177
ccactgtg ccactgtg 0.0000349130876 16627 10377.27 0 0e+00 350.00 36 0 116382
ttcaagat ttcaagat 0.0000189381018 9076 5629.00 0 0e+00 350.00 37 1 63522
gcctaggc gcctaggc 0.0000114673900 9001 3408.47 0 0e+00 350.00 38 1 62957
tgagaccc tgagaccc 0.0000182341264 13686 5419.76 0 0e+00 350.00 39 0 95740
cagtgagc cagtgagc 0.0000266527112 69817 7922.02 0 0e+00 350.00 40 14 488146
ataaagaa ataaagaa 0.0000410769150 18518 12209.35 0 0e+00 350.00 41 10 129614
atctcttg atctcttg 0.0000219946873 9949 6537.51 0 0e+00 350.00 42 0 69629
tgcatgcc tgcatgcc 0.0000157628645 10715 4685.22 0 0e+00 350.00 43 0 74997
ggcatgtg ggcatgtg 0.0000205208052 12023 6099.43 0 0e+00 350.00 44 2 84155
gtgatctg gtgatctg 0.0000184422487 18020 5481.62 0 0e+00 350.00 45 18 126118
tgggcatg tgggcatg 0.0000216844287 17502 6445.29 0 0e+00 350.00 46 10 122508
ttattata ttattata 0.0000265369301 13526 7887.61 0 0e+00 350.00 47 0 94682
cccgcgcg cccgcgcg 0.0000003684999 814 109.53 0 0e+00 350.00 48 0 5698
actcctga actcctga 0.0000298255528 43044 8865.09 0 0e+00 350.00 49 7 301228
gggggagg gggggagg 0.0000222002484 10897 6598.61 0 0e+00 350.00 50 504 76279
; Host name rsat
; Job started 2026-06-17.102651
; Job done 2026-06-17.103921
; Seconds 750.09
; user 750.09
; system 0.23
; cuser 0
; csystem 0