; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 6
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_6nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/6nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 4.80769230769231e-06
; Sequence type DNA
; Nb of sequences 596
; Sum of sequence lengths 13487021
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 9552432
; total overlapping occurrences 119214
; total non overlapping occ 9433218
; alphabet size 4
; nb possible oligomers 2080
; oligomers tested for significance 2080
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
ttaaaa ttaaaa|ttttaa 0.0018354783132 21332 17533.28 6e-170 1e-166 165.87 1 2909 106660
atttaa atttaa|ttaaat 0.0011236076374 13082 10733.19 8e-107 2e-103 102.78 2 861 65410
tttaaa tttaaa|tttaaa 0.0010259172586 12032 9800.00 2e-105 4e-102 101.35 3 0 60160
atttta atttta|taaaat 0.0016240089846 18225 15513.24 5.2e-100 1.1e-96 95.96 4 533 91125
aactga aactga|tcagtt 0.0006519713594 7873 6227.91 1.9e-89 3.9e-86 85.41 5 9 39365
aaacag aaacag|ctgttt 0.0009208916432 10716 8796.75 2e-87 4.1e-84 83.39 6 0 53580
acagta acagta|tactgt 0.0004770846338 5936 4557.32 5e-85 1.0e-81 80.99 7 25 29680
ctttta ctttta|taaaag 0.0009212011772 10671 8799.71 2.5e-83 5.2e-80 79.28 8 55 53355
tcttaa tcttaa|ttaaga 0.0006724797883 7999 6423.82 3.5e-80 7.3e-77 76.14 9 268 39995
actgaa actgaa|ttcagt 0.0007284910504 8573 6958.86 4.4e-78 9.1e-75 74.04 10 19 42865
aagtat aagtat|atactt 0.0005651506639 6821 5398.56 1.8e-77 3.8e-74 73.42 11 26 34105
taagta taagta|tactta 0.0004665892707 5753 4457.06 2.8e-77 5.9e-74 73.23 12 58 28765
agtaaa agtaaa|tttact 0.0007667868883 8965 7324.68 7.9e-77 1.6e-73 72.78 13 15 44825
cttaaa cttaaa|tttaag 0.0008055938171 9359 7695.38 2e-75 4.1e-72 71.39 14 0 46795
aaactg aaactg|cagttt 0.0008245473775 9540 7876.43 7.5e-74 1.6e-70 69.81 15 0 47700
ttagaa ttagaa|ttctaa 0.0007821700096 9093 7471.63 8e-74 1.7e-70 69.78 16 0 45465
tattaa tattaa|ttaata 0.0008054426493 9338 7693.94 8.7e-74 1.8e-70 69.74 17 586 46690
acttaa acttaa|ttaagt 0.0005758403855 6873 5500.68 3.2e-71 6.6e-68 67.18 18 165 34365
aacagt aacagt|actgtt 0.0005533379815 6629 5285.72 6.3e-71 1.3e-67 66.88 19 0 33145
attaaa attaaa|tttaat 0.0012062316274 13475 11522.45 1.5e-70 3.2e-67 66.50 20 147 67375
attaag attaag|cttaat 0.0005309363562 6383 5071.73 2.3e-70 4.8e-67 66.32 21 17 31915
acttta acttta|taaagt 0.0006534686402 7687 6242.21 5.7e-70 1.2e-66 65.93 22 26 38435
aaagta aaagta|tacttt 0.0008067887624 9304 7706.79 8.9e-70 1.9e-66 65.73 23 53 46520
aatgaa aatgaa|ttcatt 0.0011056690607 12416 10561.83 2.7e-69 5.5e-66 65.26 24 343 62080
aaggta aaggta|tacctt 0.0004294667827 5277 4102.45 2.8e-69 5.9e-66 65.23 25 10 26385
taagaa taagaa|ttctta 0.0008101576444 9331 7738.98 4.3e-69 9.0e-66 65.04 26 34 46655
aaagca aaagca|tgcttt 0.0009757367538 11049 9320.66 4.6e-68 9.6e-65 64.02 27 30 55245
aggaaa aggaaa|tttcct 0.0013562188599 14977 12955.19 1.2e-67 2.5e-64 63.60 28 58 74885
ataaag ataaag|ctttat 0.0008152613567 9350 7787.73 2.7e-66 5.5e-63 62.26 29 37 46750
aaaagg aaaagg|cctttt 0.0009544220967 10797 9117.05 7.8e-66 1.6e-62 61.79 30 0 53985
aaatga aaatga|tcattt 0.0012377609074 13716 11823.63 6.2e-65 1.3e-61 60.89 31 58 68580
ttcaaa ttcaaa|tttgaa 0.0010635364406 11901 10159.36 8.1e-64 1.7e-60 59.77 32 0 59505
aagtaa aagtaa|ttactt 0.0007110635648 8223 6792.39 1.2e-63 2.5e-60 59.59 33 74 41115
cattta cattta|taaatg 0.0009220290008 10421 8807.62 5.8e-63 1.2e-59 58.92 34 46 52105
tcttca tcttca|tgaaga 0.0008043052918 9190 7683.07 1e-62 2.1e-59 58.68 35 0 45950
ggaaaa ggaaaa|ttttcc 0.0011807202647 13085 11278.75 4.2e-62 8.7e-59 58.06 36 0 65425
aatact aatact|agtatt 0.0005972414242 7001 5705.11 6.4e-62 1.3e-58 57.87 37 0 35005
acttac acttac|gtaagt 0.0003478793719 4319 3323.09 1.7e-61 3.6e-58 57.45 38 15 21595
atagta atagta|tactat 0.0004347576551 5261 4152.99 1.8e-61 3.7e-58 57.44 39 32 26305
taagga taagga|tcctta 0.0005106582780 6075 4878.03 1.8e-61 3.8e-58 57.42 40 19 30375
agtaag agtaag|cttact 0.0004389255668 5298 4192.81 1.1e-60 2.4e-57 56.63 41 22 26490
gtaaaa gtaaaa|ttttac 0.0007748347729 8850 7401.56 3e-60 6.2e-57 56.21 42 0 44250
tagaaa tagaaa|tttcta 0.0010169263749 11366 9714.12 3.5e-60 7.2e-57 56.14 43 63 56830
aagtta aagtta|taactt 0.0005761931103 6755 5504.05 7.1e-60 1.5e-56 55.83 44 29 33775
gaagta gaagta|tacttc 0.0004180572145 5065 3993.46 7.9e-60 1.6e-56 55.78 45 9 25325
atgaag atgaag|cttcat 0.0006902384034 7954 6593.46 1.7e-59 3.4e-56 55.46 46 18 39770
tagtaa tagtaa|ttacta 0.0004476357103 5377 4276.01 3.4e-59 7.1e-56 55.15 47 10 26885
cagtaa cagtaa|ttactg 0.0005416404747 6380 5173.98 4e-59 8.3e-56 55.08 48 0 31900
aggtaa aggtaa|ttacct 0.0004831529404 5752 4615.29 1.1e-58 2.4e-55 54.63 49 4 28760
aaaggt aaaggt|accttt 0.0005666551432 6628 5412.93 1.4e-57 3.0e-54 53.52 50 0 33140
; Host name rsat
; Job started 2026-06-17.110755
; Job done 2026-06-17.110758
; Seconds 2.04
; user 2.04
; system 0.02
; cuser 1.15
; csystem 0.03