; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_7nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 7
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_7nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/7nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 1.220703125e-06
; Sequence type DNA
; Nb of sequences 596
; Sum of sequence lengths 13487021
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 9530986
; total overlapping occurrences 99070
; total non overlapping occ 9431916
; alphabet size 4
; nb possible oligomers 8192
; oligomers tested for significance 8192
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
tttaaaa tttaaaa|ttttaaa 0.0007390507468 8786 7043.88 3.8e-89 3.1e-85 84.51 1 2909 52716
ttaaaaa ttaaaaa|tttttaa 0.0008534653425 9812 8134.37 7.3e-73 6.0e-69 68.22 2 712 58872
aaactga aaactga|tcagttt 0.0002633151458 3347 2509.65 3.6e-57 3.0e-53 52.52 3 2 20082
attttaa attttaa|ttaaaat 0.0005545536087 6435 5285.44 4.8e-53 3.9e-49 48.41 4 271 38610
cttttaa cttttaa|ttaaaag 0.0003166750007 3813 3018.22 3.7e-44 3.0e-40 39.52 5 55 22878
cttaaaa cttaaaa|ttttaag 0.0003323889953 3970 3167.99 5e-43 4.1e-39 38.38 6 0 23820
attaaat attaaat|atttaat 0.0003215815713 3850 3064.99 1.4e-42 1.1e-38 37.95 7 37 23100
actttat actttat|ataaagt 0.0002044146849 2561 1948.27 2.9e-40 2.4e-36 35.62 8 3 15366
catttta catttta|taaaatg 0.0004004253320 4646 3816.45 8.1e-39 6.6e-35 34.18 9 17 27876
atttaaa atttaaa|tttaaat 0.0004489290511 5153 4278.74 1.3e-38 1.0e-34 33.98 10 748 30918
aaatact aaatact|agtattt 0.0002594244731 3141 2472.57 2.5e-38 2.0e-34 33.69 11 0 18846
aaaacag aaaacag|ctgtttt 0.0003530599950 4123 3365.01 8.8e-37 7.2e-33 32.14 12 0 24738
tacttaa tacttaa|ttaagta 0.0001527696078 1958 1456.04 4.6e-36 3.8e-32 31.43 13 11 11748
actgtat actgtat|atacagt 0.0001439435449 1856 1371.92 1.5e-35 1.2e-31 30.91 14 2 11136
aaaagca aaaagca|tgctttt 0.0003484848521 4058 3321.40 2.6e-35 2.1e-31 30.67 15 3 24348
aactgaa aactgaa|ttcagtt 0.0002311162271 2803 2202.77 7.4e-35 6.0e-31 30.22 16 7 16818
tatttaa tatttaa|ttaaata 0.0003641916417 4218 3471.11 7.8e-35 6.4e-31 30.20 17 78 25308
acttaat acttaat|attaagt 0.0001498660132 1914 1428.37 1.5e-34 1.2e-30 29.90 18 0 11484
agtaaat agtaaat|atttact 0.0002163532859 2640 2062.06 1.8e-34 1.5e-30 29.83 19 2 15840
aagtatt aagtatt|aatactt 0.0002002646340 2460 1908.72 7.7e-34 6.3e-30 29.20 20 0 14760
aatttta aatttta|taaaatt 0.0004523658119 5126 4311.49 1.1e-33 9.0e-30 29.05 21 142 30756
acttact acttact|agtaagt 0.0001210966505 1584 1154.17 2.9e-33 2.3e-29 28.63 22 2 9504
tacagta tacagta|tactgta 0.0001279053277 1660 1219.06 3e-33 2.5e-29 28.61 23 8 9960
actgaag actgaag|cttcagt 0.0001730587452 2154 1649.42 1e-32 8.4e-29 28.07 24 0 12924
aggtaag aggtaag|cttacct 0.0001099794136 1454 1048.21 1.5e-32 1.2e-28 27.92 25 1 8724
tcttaaa tcttaaa|tttaaga 0.0002718890356 3214 2591.37 2.5e-32 2.0e-28 27.70 26 0 19284
catttaa catttaa|ttaaatg 0.0002809384519 3310 2677.62 2.5e-32 2.1e-28 27.68 27 46 19860
ggaaaaa ggaaaaa|tttttcc 0.0004048491709 4611 3858.61 3.7e-32 3.1e-28 27.51 28 0 27666
cagtaaa cagtaaa|tttactg 0.0001821009567 2247 1735.60 4.5e-32 3.6e-28 27.44 29 0 13482
aaacaga aaacaga|tctgttt 0.0003358185512 3885 3200.68 6.7e-32 5.5e-28 27.26 30 6 23310
tgtaaaa tgtaaaa|ttttaca 0.0003063142836 3569 2919.48 1.9e-31 1.5e-27 26.82 31 0 21414
cttacta cttacta|tagtaag 0.0000912753651 1234 869.94 2.2e-31 1.8e-27 26.75 32 1 7404
aaaaggt aaaaggt|acctttt 0.0001859051700 2282 1771.86 2.3e-31 1.9e-27 26.73 33 0 13692
ttagaaa ttagaaa|tttctaa 0.0003142181130 3650 2994.81 3e-31 2.5e-27 26.61 34 0 21900
taaaaca taaaaca|tgtttta 0.0003458118159 3981 3295.93 3.8e-31 3.1e-27 26.51 35 5 23886
ttaagaa ttaagaa|ttcttaa 0.0002644967575 3122 2520.91 4.5e-31 3.7e-27 26.44 36 34 18732
tcagtaa tcagtaa|ttactga 0.0001567683547 1961 1494.16 5.8e-31 4.7e-27 26.33 37 0 11766
atcttca atcttca|tgaagat 0.0001780877999 2192 1697.35 8.5e-31 7.0e-27 26.16 38 3 13152
aatctga aatctga|tcagatt 0.0001672875808 2074 1594.42 9.7e-31 7.9e-27 26.10 39 1 12444
taaggaa taaggaa|ttcctta 0.0001988740788 2416 1895.47 1.1e-30 8.8e-27 26.06 40 3 14496
aaatgaa aaatgaa|ttcattt 0.0004694919766 5256 4474.72 3.3e-30 2.7e-26 25.57 41 38 31536
aaaggta aaaggta|taccttt 0.0001501686211 1882 1431.26 3.6e-30 3.0e-26 25.53 42 4 11292
aatttaa aatttaa|ttaaatt 0.0003583412228 4098 3415.35 5.3e-30 4.4e-26 25.36 43 205 24588
acttgct acttgct|agcaagt 0.0001346923900 1710 1283.75 6e-30 4.9e-26 25.31 44 0 10260
acagtaa acagtaa|ttactgt 0.0001601042463 1988 1525.95 7.4e-30 6.1e-26 25.22 45 1 11928
aacagta aacagta|tactgtt 0.0001381363557 1745 1316.58 1.4e-29 1.1e-25 24.94 46 3 10470
acagata acagata|tatctgt 0.0001616172856 2000 1540.37 2.4e-29 2.0e-25 24.70 47 2 12000
tccttaa tccttaa|ttaagga 0.0001496282499 1869 1426.10 2.5e-29 2.1e-25 24.69 48 19 11214
cttttta cttttta|taaaaag 0.0003600199760 4107 3431.35 2.5e-29 2.1e-25 24.68 49 16 24642
aacagtt aacagtt|aactgtt 0.0001490086243 1862 1420.20 2.7e-29 2.2e-25 24.66 50 0 11172
; Host name rsat
; Job started 2026-06-17.110758
; Job done 2026-06-17.110802
; Seconds 2.71
; user 2.71
; system 0.02
; cuser 1.33
; csystem 0.03