; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.105153_b1GIa6.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.105153_7VML1X_8nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/8nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 3.03988326848249e-07
; Sequence type DNA
; Nb of sequences 596
; Sum of sequence lengths 13487021
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 9513250
; total overlapping occurrences 46748
; total non overlapping occ 9466502
; alphabet size 4
; nb possible oligomers 32896
; oligomers tested for significance 32896
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
tttaaaaa tttaaaaa|tttttaaa 0.0003957344192 4655 3764.72 9.5e-45 3.1e-40 39.50 1 712 32585
ttaaaaaa ttaaaaaa|ttttttaa 0.0003546039475 4175 3373.44 1.2e-40 3.8e-36 35.42 2 152 29225
ttttaaaa ttttaaaa|ttttaaaa 0.0002421508741 2909 2303.64 4.8e-34 1.6e-29 28.80 3 0 20363
gaaactga gaaactga|tcagtttc 0.0000806409942 1110 767.16 2.5e-31 8.1e-27 26.09 4 0 7770
attttaaa attttaaa|tttaaaat 0.0002479010697 2931 2358.34 3.6e-30 1.2e-25 24.93 5 253 20517
ccatttta ccatttta|taaaatgg 0.0000907794970 1201 863.61 1.3e-27 4.3e-23 22.36 6 2 8407
aaactgag aaactgag|ctcagttt 0.0000834584460 1115 793.96 4e-27 1.3e-22 21.88 7 0 7805
atttaaaa atttaaaa|ttttaaat 0.0002452709677 2854 2333.32 1.2e-25 3.8e-21 20.42 8 8 19978
cttttaaa cttttaaa|tttaaaag 0.0001393174890 1719 1325.36 2.7e-25 8.8e-21 20.06 9 55 12033
ggaaaaaa ggaaaaaa|ttttttcc 0.0001699563757 2033 1616.84 1.4e-23 4.5e-19 18.34 10 0 14231
attaaatg attaaatg|catttaat 0.0000770957609 1012 733.43 1.4e-22 4.5e-18 17.35 11 0 7084
aggattaa aggattaa|ttaatcct 0.0000418668056 607 398.29 1.7e-22 5.7e-18 17.25 12 2 4249
aattttaa aattttaa|ttaaaatt 0.0001714335563 2036 1630.89 2.5e-22 8.3e-18 17.08 13 49 14252
aagtcact aagtcact|agtgactt 0.0000458227673 647 435.92 2.5e-21 8.1e-17 16.09 14 0 4529
actgactg actgactg|cagtcagt 0.0000295233407 451 280.86 6.6e-21 2.2e-16 15.66 15 7 3157
ctttaaaa ctttaaaa|ttttaaag 0.0001553791255 1850 1478.16 7.3e-21 2.4e-16 15.62 16 0 12950
aactgaag aactgaag|cttcagtt 0.0000547723199 747 521.06 8.9e-21 2.9e-16 15.54 17 0 5229
aaatactt aaatactt|aagtattt 0.0000894392259 1135 850.86 1.1e-20 3.6e-16 15.45 18 0 7945
aactgagg aactgagg|cctcagtt 0.0000658908058 871 626.84 1.9e-20 6.3e-16 15.20 19 0 6097
attaagta attaagta|tacttaat 0.0000433439862 610 412.34 6.2e-20 2.0e-15 14.69 20 0 4270
agcactta agcactta|taagtgct 0.0000372335026 532 354.21 8.8e-19 2.9e-14 13.54 21 0 3724
gtttttaa gtttttaa|ttaaaaac 0.0001105881282 1347 1052.05 1.6e-18 5.3e-14 13.27 22 7 9429
aggttaag aggttaag|cttaacct 0.0000315193359 462 299.85 2.5e-18 8.3e-14 13.08 23 0 3234
aaattaag aaattaag|cttaattt 0.0000763175389 971 726.03 3.1e-18 1.0e-13 13.00 24 0 6797
attttaag attttaag|cttaaaat 0.0000929340190 1150 884.10 7.1e-18 2.3e-13 12.63 25 0 8050
ccttttcc ccttttcc|ggaaaagg 0.0000735937621 937 700.12 9.7e-18 3.2e-13 12.50 26 3 6559
aatttaaa aatttaaa|tttaaatt 0.0001666129036 1935 1585.03 1.1e-17 3.5e-13 12.46 27 106 13545
gagcctca gagcctca|tgaggctc 0.0000438772124 602 417.41 1.4e-17 4.6e-13 12.34 28 0 4214
aggaaaaa aggaaaaa|tttttcct 0.0001693582977 1962 1611.15 1.6e-17 5.1e-13 12.29 29 1 13734
ttaaataa ttaaataa|ttatttaa 0.0001318883515 1565 1254.69 1.8e-17 6.0e-13 12.22 30 15 10955
aatctgaa aatctgaa|ttcagatt 0.0000607747170 792 578.17 2.2e-17 7.1e-13 12.15 31 2 5544
taaggaaa taaggaaa|tttcctta 0.0000797186572 1001 758.38 2.6e-17 8.5e-13 12.07 32 0 7007
tccttaaa tccttaaa|tttaagga 0.0000561053853 737 533.74 5.2e-17 1.7e-12 11.77 33 0 5159
ctggcaca ctggcaca|tgtgccag 0.0000578131501 756 549.99 5.4e-17 1.8e-12 11.75 34 0 5292
actgtata actgtata|tatacagt 0.0000339188535 483 322.68 5.6e-17 1.8e-12 11.73 35 2 3381
acaaggta acaaggta|taccttgt 0.0000250485644 377 238.29 7.4e-17 2.4e-12 11.61 36 0 2639
attttaca attttaca|tgtaaaat 0.0001118995764 1345 1064.53 8.2e-17 2.7e-12 11.57 37 2 9415
cagtttcc cagtttcc|ggaaactg 0.0000731758280 925 696.14 8.4e-17 2.8e-12 11.56 38 0 6475
aaactgaa aaactgaa|ttcagttt 0.0000944544340 1157 898.57 8.5e-17 2.8e-12 11.55 39 1 8099
agtaaata agtaaata|tatttact 0.0000746530086 941 710.19 9e-17 3.0e-12 11.53 40 3 6587
ttaatgaa ttaatgaa|ttcattaa 0.0000684992905 873 651.65 9.5e-17 3.1e-12 11.50 41 3 6111
tactacta tactacta|tagtagta 0.0000196658624 310 187.09 1.4e-16 4.6e-12 11.34 42 25 2170
ggctcaga ggctcaga|tctgagcc 0.0000559540642 732 532.31 1.5e-16 5.0e-12 11.30 43 0 5124
aatattta aatattta|taaatatt 0.0001443471086 1687 1373.21 1.6e-16 5.3e-12 11.28 44 110 11809
tgaggaaa tgaggaaa|tttcctca 0.0000955064748 1165 908.58 2e-16 6.6e-12 11.18 45 0 8155
agtttaaa agtttaaa|tttaaact 0.0000714752689 903 679.96 2.2e-16 7.1e-12 11.15 46 10 6321
cttaaaaa cttaaaaa|tttttaag 0.0001299860312 1533 1236.59 2.4e-16 8.1e-12 11.09 47 0 10731
taatagta taatagta|tactatta 0.0000394240534 543 375.05 2.6e-16 8.5e-12 11.07 48 2 3801
atacagta atacagta|tactgtat 0.0000437475087 591 416.18 4.4e-16 1.5e-11 10.83 49 1 4137
aggatgaa aggatgaa|ttcatcct 0.0000518107529 682 492.89 4.8e-16 1.6e-11 10.80 50 1 4774
; Host name rsat
; Job started 2026-06-17.110802
; Job done 2026-06-17.110810
; Seconds 5.72
; user 5.72
; system 0.09
; cuser 1.59
; csystem 0.06