; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.110136_Zz6QXy.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Saccharomyces_cerevisiae -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.110136_7yvbuj_8nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 8
; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.110136_Zz6QXy.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.110136_7yvbuj_8nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Saccharomyces_cerevisiae
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Saccharomyces_cerevisiae/oligo-frequencies/8nt_upstream-noorf_Saccharomyces_cerevisiae-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 3.03988326848249e-07
; Sequence type DNA
; Nb of sequences 165
; Sum of sequence lengths 3837460
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 2739856
; total overlapping occurrences 14433
; total non overlapping occ 2725423
; alphabet size 4
; nb possible oligomers 32896
; oligomers tested for significance 32896
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
agcccagg agcccagg|cctgggct 0.0000095934858 472 26.28 0 0e+00 350.00 1 0 3304
ccccagcc ccccagcc|ggctgggg 0.0000052805049 467 14.47 0 0e+00 350.00 2 2 3269
cccaggag cccaggag|ctcctggg 0.0000052805049 378 14.47 0 0e+00 350.00 3 0 2646
caggcccc caggcccc|ggggcctg 0.0000036216660 303 9.92 0 0e+00 350.00 4 0 2121
caggctgg caggctgg|ccagcctg 0.0000049487371 500 13.56 0 0e+00 350.00 5 0 3500
cagccctg cagccctg|cagggctg 0.0000082664148 466 22.65 0 0e+00 350.00 6 0 3262
cccagccc cccagccc|gggctggg 0.0000066075759 556 18.10 0 0e+00 350.00 7 11 3892
ccccaggc ccccaggc|gcctgggg 0.0000039534337 350 10.83 0 0e+00 350.00 8 1 2450
gcccaggc gcccaggc|gcctgggc 0.0000062758082 391 17.19 0 0e+00 350.00 9 2 2737
aggctggg aggctggg|cccagcct 0.0000085981826 453 23.56 0 0e+00 350.00 10 0 3171
ccagggcc ccagggcc|ggccctgg 0.0000036216660 358 9.92 0 0e+00 350.00 11 5 2506
cccacccc cccacccc|ggggtggg 0.0000129111635 510 35.37 0 0e+00 350.00 12 22 3570
ccctgggc ccctgggc|gcccaggg 0.0000059440404 381 16.29 0 0e+00 350.00 13 2 2667
cctgggcc cctgggcc|ggcccagg 0.0000059440404 371 16.29 0 0e+00 350.00 14 5 2597
cctggggc cctggggc|gccccagg 0.0000059440404 351 16.29 0 0e+00 350.00 15 0 2457
ccctggcc ccctggcc|ggccaggg 0.0000046169694 337 12.65 0 0e+00 350.00 16 2 2359
ctgcctcc ctgcctcc|ggaggcag 0.0000099252536 422 27.19 0 0e+00 350.00 17 2 2954
ctccctgc ctccctgc|gcagggag 0.0000059440404 359 16.29 0 0e+00 350.00 18 1 2513
cagcccag cagcccag|ctgggctg 0.0000102570214 429 28.10 0 0e+00 350.00 19 5 3003
cagcctcc cagcctcc|ggaggctg 0.0000092617181 435 25.38 0 0e+00 350.00 20 0 3045
cagcccca cagcccca|tggggctg 0.0000056122726 382 15.38 0 0e+00 350.00 21 0 2674
agcctggg agcctggg|cccaggct 0.0000042852016 474 11.74 0 0e+00 350.00 22 0 3318
cctggccc cctggccc|gggccagg 0.0000062758082 365 17.19 0 0e+00 350.00 23 0 2555
ctccagcc ctccagcc|ggctggag 0.0000059440404 400 16.29 0 0e+00 350.00 24 0 2800
cctcccca cctcccca|tggggagg 0.0000145700024 476 39.92 0 0e+00 350.00 25 0 3332
ccaggccc ccaggccc|gggcctgg 0.0000029581305 403 8.10 0 0e+00 350.00 26 0 2821
cagcctgg cagcctgg|ccaggctg 0.0000112523247 501 30.83 0 0e+00 350.00 27 0 3507
cctgggca cctgggca|tgcccagg 0.0000036216660 390 9.92 0 0e+00 350.00 28 0 2730
ccctgccc ccctgccc|gggcaggg 0.0000089299503 507 24.47 0 0e+00 350.00 29 19 3549
cagggagg cagggagg|cctccctg 0.0000059440404 431 16.29 0 0e+00 350.00 30 0 3017
cccagggc cccagggc|gccctggg 0.0000042852016 395 11.74 0 0e+00 350.00 31 0 2765
ccccaccc ccccaccc|gggtgggg 0.0000142382347 591 39.01 0 0e+00 350.00 32 17 4137
ccccaggg ccccaggg|ccctgggg 0.0000062758082 371 17.19 0 0e+00 350.00 33 0 2597
ccctcccc ccctcccc|ggggaggg 0.0000212053578 558 58.10 0 0e+00 350.00 34 15 3906
cccaggcc cccaggcc|ggcctggg 0.0000069393437 419 19.01 0 0e+00 350.00 35 6 2933
ccagcccc ccagcccc|ggggctgg 0.0000056122726 442 15.38 0 0e+00 350.00 36 1 3094
cctcccag cctcccag|ctgggagg 0.0000095934858 409 26.28 1e-323 3e-319 318.49 37 0 2863
cctgggag cctgggag|ctcccagg 0.0000059440404 349 16.29 2e-322 7e-318 317.17 38 0 2443
ctcccagc ctcccagc|gctgggag 0.0000066075759 360 18.10 2e-321 7e-317 316.14 39 0 2520
cccctccc cccctccc|gggagggg 0.0000218688933 550 59.92 4e-319 1e-314 313.93 40 15 3850
ctcctgcc ctcctgcc|ggcaggag 0.0000095934858 405 26.28 6e-319 2e-314 313.73 41 0 2835
cagccagg cagccagg|cctggctg 0.0000089299503 394 24.47 2e-317 6e-313 312.20 42 0 2758
ctgcccag ctgcccag|ctgggcag 0.0000069393437 360 19.01 4e-314 1e-309 308.87 43 0 2520
agccccag agccccag|ctggggct 0.0000056122726 335 15.38 7e-312 2e-307 306.61 44 1 2345
cctcctcc cctcctcc|ggaggagg 0.0000182194479 503 49.92 2e-310 8e-306 305.10 45 58 3521
ccacccca ccacccca|tggggtgg 0.0000072711114 360 19.92 3e-307 1e-302 301.96 46 4 2520
ggctggga ggctggga|tcccagcc 0.0000069393437 349 19.01 4e-300 1e-295 294.89 47 0 2443
ctccccag ctccccag|ctggggag 0.0000102570214 394 28.10 3e-295 9e-291 290.07 48 0 2758
cctcctgc cctcctgc|gcaggagg 0.0000092617181 379 25.38 8e-294 2e-289 288.60 49 1 2653
cccccagg cccccagg|cctggggg 0.0000042852016 296 11.74 9e-294 3e-289 288.53 50 0 2072
; Host name rsat
; Job started 2026-06-17.110305
; Job done 2026-06-17.110310
; Seconds 4.69
; user 4.69
; system 0.08
; cuser 0.64
; csystem 0.02